Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ETT51_RS08825 Genome accession   NZ_CP035448
Coordinates   1757976..1758572 (-) Length   198 a.a.
NCBI ID   WP_063632442.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm70     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1752976..1763572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT51_RS08790 (ETT51_08945) - 1753036..1753341 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  ETT51_RS08795 (ETT51_08950) ruvX 1753353..1753772 (-) 420 WP_063632439.1 Holliday junction resolvase RuvX -
  ETT51_RS08800 (ETT51_08955) - 1753769..1754038 (-) 270 WP_063632440.1 IreB family regulatory phosphoprotein -
  ETT51_RS08805 (ETT51_08960) spx 1754152..1754550 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  ETT51_RS08810 (ETT51_08965) recA 1754841..1755977 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  ETT51_RS08815 (ETT51_08970) cinA 1756066..1757337 (-) 1272 WP_002992182.1 competence/damage-inducible protein A Machinery gene
  ETT51_RS08820 (ETT51_08975) - 1757406..1757966 (-) 561 WP_136276054.1 DNA-3-methyladenine glycosylase I -
  ETT51_RS08825 (ETT51_08980) ruvA 1757976..1758572 (-) 597 WP_063632442.1 Holliday junction branch migration protein RuvA Machinery gene
  ETT51_RS08830 (ETT51_08985) - 1758574..1759794 (-) 1221 WP_032461237.1 MDR family MFS transporter -
  ETT51_RS08835 (ETT51_08990) hexB 1759805..1761787 (-) 1983 WP_032467064.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21863.31 Da        Isoelectric Point: 7.3926

>NTDB_id=302926 ETT51_RS08825 WP_063632442.1 1757976..1758572(-) (ruvA) [Streptococcus pyogenes strain emm70]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEVEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKAKELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=302926 ETT51_RS08825 WP_063632442.1 1757976..1758572(-) (ruvA) [Streptococcus pyogenes strain emm70]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGTTGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAAGCAAAAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA
CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.482

99.495

0.652
  ruvA Streptococcus pneumoniae R6

65.482

99.495

0.652
  ruvA Streptococcus pneumoniae D39

65.482

99.495

0.652
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.419