Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DTQ70_RS09410 Genome accession   NZ_CP031030
Coordinates   2230785..2231258 (+) Length   157 a.a.
NCBI ID   WP_122930575.1    Uniprot ID   A0A3G3GM38
Organism   Runella sp. SP2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2225785..2236258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTQ70_RS09385 (DTQ70_09390) - 2225810..2226316 (-) 507 WP_164489946.1 hypothetical protein -
  DTQ70_RS09390 (DTQ70_09395) - 2226426..2227985 (-) 1560 WP_028525546.1 Rne/Rng family ribonuclease -
  DTQ70_RS09395 (DTQ70_09400) - 2228302..2229147 (-) 846 WP_122930574.1 tetratricopeptide repeat protein -
  DTQ70_RS09400 (DTQ70_09405) - 2229192..2229476 (-) 285 WP_028525548.1 HU family DNA-binding protein -
  DTQ70_RS09405 (DTQ70_09410) mutY 2229654..2230718 (+) 1065 WP_122934329.1 A/G-specific adenine glycosylase -
  DTQ70_RS09410 (DTQ70_09415) ssb 2230785..2231258 (+) 474 WP_122930575.1 single-stranded DNA-binding protein Machinery gene
  DTQ70_RS09415 (DTQ70_09420) - 2231345..2231761 (-) 417 WP_164489947.1 hypothetical protein -
  DTQ70_RS09420 (DTQ70_09425) - 2231851..2232222 (+) 372 WP_122930577.1 VOC family protein -
  DTQ70_RS09425 (DTQ70_09430) msrB 2232224..2232700 (-) 477 WP_122930578.1 peptide-methionine (R)-S-oxide reductase MsrB -
  DTQ70_RS09430 (DTQ70_09435) - 2232778..2233542 (+) 765 WP_122930579.1 SDR family oxidoreductase -
  DTQ70_RS09435 (DTQ70_09440) - 2233663..2234883 (+) 1221 WP_122930580.1 sugar MFS transporter -
  DTQ70_RS09440 (DTQ70_09445) - 2234907..2235986 (+) 1080 WP_122930581.1 galactokinase family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17158.90 Da        Isoelectric Point: 5.8002

>NTDB_id=302921 DTQ70_RS09410 WP_122930575.1 2230785..2231258(+) (ssb) [Runella sp. SP2]
MAGVNKVILLGNLGSDPEVRHLENGSAVARFNIATSESYTNRSGERVEQTEWHRIELWDNLAKIAEQYLRKGNTVYIEGK
LRTETWVDKEGKQREGKTVRGTTLTLVGGRNSNNNDDNSSGYNAPQQSAPAPRPAPQPKPATPIASDLGGGDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=302921 DTQ70_RS09410 WP_122930575.1 2230785..2231258(+) (ssb) [Runella sp. SP2]
ATGGCTGGAGTAAACAAAGTAATTTTATTGGGCAATTTGGGAAGTGACCCAGAGGTTCGTCACCTCGAAAATGGCTCAGC
AGTAGCACGTTTTAACATCGCAACCTCTGAAAGCTACACCAATCGCAGCGGCGAACGTGTGGAACAAACAGAATGGCATC
GGATTGAACTTTGGGACAATTTGGCAAAAATTGCGGAACAGTATTTACGCAAAGGAAACACTGTTTATATTGAAGGAAAA
CTTCGTACCGAAACCTGGGTGGATAAAGAAGGAAAACAGCGCGAAGGAAAAACTGTACGGGGAACAACATTGACACTCGT
TGGAGGTCGTAATTCAAACAATAACGACGACAATTCGTCGGGTTACAATGCACCACAACAGTCAGCGCCTGCACCTCGTC
CTGCTCCTCAACCTAAACCTGCGACACCCATCGCCTCTGACTTAGGTGGTGGAGATGATGACTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G3GM38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

42.222

100

0.484
  ssb Neisseria meningitidis MC58

40.571

100

0.452
  ssb Vibrio cholerae strain A1552

41.04

100

0.452
  ssb Neisseria gonorrhoeae MS11

40.116

100

0.439

Multiple sequence alignment