Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DTO64_RS04925 Genome accession   NZ_CP031027
Coordinates   916335..918008 (+) Length   557 a.a.
NCBI ID   WP_002404473.1    Uniprot ID   A0AAJ1Y112
Organism   Enterococcus faecalis strain TY1 isolate flatfish     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 911335..923008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTO64_RS04895 (DTO64_04895) - 912007..912237 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  DTO64_RS04900 (DTO64_04900) - 912237..913118 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  DTO64_RS04905 (DTO64_04905) - 913132..913947 (+) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  DTO64_RS04910 (DTO64_04910) - 914362..914871 (+) 510 WP_002358879.1 matrixin family metalloprotease -
  DTO64_RS04915 (DTO64_04915) - 914936..915736 (+) 801 WP_002388835.1 hypothetical protein -
  DTO64_RS04920 (DTO64_04920) - 915868..916317 (+) 450 WP_002358881.1 arginine repressor -
  DTO64_RS04925 (DTO64_04925) recN 916335..918008 (+) 1674 WP_002404473.1 DNA repair protein RecN Machinery gene
  DTO64_RS16830 - 918100..918210 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  DTO64_RS04935 (DTO64_04935) - 918278..919243 (-) 966 WP_002386196.1 magnesium transporter CorA family protein -
  DTO64_RS04940 (DTO64_04940) - 919488..919880 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  DTO64_RS04950 (DTO64_04950) mraZ 920114..920599 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  DTO64_RS04955 (DTO64_04955) rsmH 920614..921570 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  DTO64_RS04960 (DTO64_04960) ftsL 921587..921994 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62655.07 Da        Isoelectric Point: 4.5521

>NTDB_id=302894 DTO64_RS04925 WP_002404473.1 916335..918008(+) (recN) [Enterococcus faecalis strain TY1 isolate flatfish]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAVHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=302894 DTO64_RS04925 WP_002404473.1 916335..918008(+) (recN) [Enterococcus faecalis strain TY1 isolate flatfish]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTAATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGTTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTAGATACAGGAGTCAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.596

100

0.497

Multiple sequence alignment