Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DT536_RS06500 Genome accession   NZ_CP031011
Coordinates   1353326..1353982 (+) Length   218 a.a.
NCBI ID   WP_058870419.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348326..1358982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS06485 (DT536_06485) - 1348736..1349542 (+) 807 WP_058870422.1 putative RNA methyltransferase -
  DT536_RS06490 (DT536_06490) ponA 1349574..1352102 (-) 2529 WP_114392656.1 penicillin-binding protein PBP1a -
  DT536_RS06495 (DT536_06495) pilM 1352268..1353326 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  DT536_RS06500 (DT536_06500) comN 1353326..1353982 (+) 657 WP_058870419.1 PilN domain-containing protein Machinery gene
  DT536_RS06505 (DT536_06505) pilO 1353979..1354701 (+) 723 WP_058870418.1 type 4a pilus biogenesis protein PilO Machinery gene
  DT536_RS06510 (DT536_06510) pilP 1354701..1355228 (+) 528 WP_058870417.1 pilus assembly protein PilP Machinery gene
  DT536_RS06515 (DT536_06515) pilQ 1355248..1357311 (+) 2064 WP_058870416.1 type IV pilus secretin PilQ family protein Machinery gene
  DT536_RS06520 (DT536_06520) aroK 1357349..1357882 (+) 534 WP_004978075.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24300.74 Da        Isoelectric Point: 5.4589

>NTDB_id=302836 DT536_RS06500 WP_058870419.1 1353326..1353982(+) (comN) [Acinetobacter johnsonii strain LXL_C1]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRIEENYGTFVVTADLDEIAQPVTSDATKPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=302836 DT536_RS06500 WP_058870419.1 1353326..1353982(+) (comN) [Acinetobacter johnsonii strain LXL_C1]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCTTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTGGAAGATCAAGAACAGGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTTCAATTAAAGTCATTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGCCCTGTGGCTGTGCGTTTGGTCGATGAAATGGTACG
TGTTACACCGAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGTAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGAAATCTCGAAGCATCGGCATGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTATTGAAGAAAACTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCTCAGCCAGTAACGTCTGATGCGACCAAACCTGAAGCAGCAAGCACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

71.292

95.872

0.683
  pilN Acinetobacter baumannii D1279779

70.335

95.872

0.674

Multiple sequence alignment