Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   DT536_RS06505 Genome accession   NZ_CP031011
Coordinates   1353979..1354701 (+) Length   240 a.a.
NCBI ID   WP_058870418.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348979..1359701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS06490 (DT536_06490) ponA 1349574..1352102 (-) 2529 WP_114392656.1 penicillin-binding protein PBP1a -
  DT536_RS06495 (DT536_06495) pilM 1352268..1353326 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  DT536_RS06500 (DT536_06500) comN 1353326..1353982 (+) 657 WP_058870419.1 PilN domain-containing protein Machinery gene
  DT536_RS06505 (DT536_06505) pilO 1353979..1354701 (+) 723 WP_058870418.1 type 4a pilus biogenesis protein PilO Machinery gene
  DT536_RS06510 (DT536_06510) pilP 1354701..1355228 (+) 528 WP_058870417.1 pilus assembly protein PilP Machinery gene
  DT536_RS06515 (DT536_06515) pilQ 1355248..1357311 (+) 2064 WP_058870416.1 type IV pilus secretin PilQ family protein Machinery gene
  DT536_RS06520 (DT536_06520) aroK 1357349..1357882 (+) 534 WP_004978075.1 shikimate kinase AroK -
  DT536_RS06525 (DT536_06525) aroB 1357913..1358998 (+) 1086 WP_058870415.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27002.41 Da        Isoelectric Point: 4.9937

>NTDB_id=302837 DT536_RS06505 WP_058870418.1 1353979..1354701(+) (pilO) [Acinetobacter johnsonii strain LXL_C1]
MSRDEFEELTSENHAVTKKKMTVDRFFQQFNTLDPNNYGSWPFSVKLTCWIFIILVIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATAAAGVENTAKADAGGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=302837 DT536_RS06505 WP_058870418.1 1353979..1354701(+) (pilO) [Acinetobacter johnsonii strain LXL_C1]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCATGCTGTAACCAAGAAAAAAATGACGGTTGATAGGTTTTT
TCAACAGTTTAATACCTTAGATCCAAACAATTACGGTAGTTGGCCCTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTTTAGTGATTGGAGCTTTGGGTTATTTTGTCGTGATTAAGCCGAAGCTTGATGCGATTTCAAATGCACATGCACAAGAA
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAACTTGCAGCAATATCAAGCACAATTGCAAGAAAT
GGAAGCCAATTTCAATCAGCAGTTAGAACAGTTGCCGAAAGAAACTGAAATTCCGGGTTTGGTTGAAGATATCAACGTGA
GCGGCGTAAATTCTGGATTAAAGTTTAAAAATATTCGTTTAGAGCCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCCATTGAAGCGACGGGTGATTATCATTCTTTTGGTTCATTTGTCAGTGGAATTGCAGCTTTGCCGCGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAACAATGAGAAAAAGACGGATATTCCGCAAATTTCATACAGTGTAAAAG
CGAAAACCTACCGTTATGTCGGGGCGACAGCTGCTGCAGGTGTGGAAAATACAGCTAAAGCAGATGCAGGAGGTGCTCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

71.967

99.583

0.717
  comO Acinetobacter baylyi ADP1

67.347

100

0.688

Multiple sequence alignment