Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DT536_RS05970 Genome accession   NZ_CP031011
Coordinates   1248994..1249578 (+) Length   194 a.a.
NCBI ID   WP_058870676.1    Uniprot ID   A0AAW6J840
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1250037..1257869 1248994..1249578 flank 459


Gene organization within MGE regions


Location: 1248994..1257869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS05970 (DT536_05970) ssb 1248994..1249578 (+) 585 WP_058870676.1 single-stranded DNA-binding protein Machinery gene
  DT536_RS16805 (DT536_05975) - 1249730..1249918 (+) 189 Protein_1148 site-specific integrase -
  DT536_RS05980 (DT536_05980) - 1249974..1250906 (+) 933 WP_114392652.1 IS5 family transposase -
  DT536_RS05985 (DT536_05985) - 1251064..1253634 (+) 2571 WP_058870624.1 toll/interleukin-1 receptor domain-containing protein -
  DT536_RS05990 (DT536_05990) - 1253642..1254508 (-) 867 WP_058952493.1 DUF4231 domain-containing protein -
  DT536_RS05995 (DT536_05995) - 1254517..1254969 (-) 453 WP_081313284.1 TIR domain-containing protein -
  DT536_RS06005 (DT536_06005) - 1256779..1257869 (-) 1091 Protein_1154 IS3 family transposase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21314.06 Da        Isoelectric Point: 6.4819

>NTDB_id=302833 DT536_RS05970 WP_058870676.1 1248994..1249578(+) (ssb) [Acinetobacter johnsonii strain LXL_C1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYAGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=302833 DT536_RS05970 WP_058870676.1 1248994..1249578(+) (ssb) [Acinetobacter johnsonii strain LXL_C1]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTCCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCAACGAGCGACTCTTGGACAGACAAAAGCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAGGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGCGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGCCGGTAATCCAGCAGCGGGTAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

40.909

100

0.418
  ssb Neisseria gonorrhoeae MS11

40.909

100

0.418

Multiple sequence alignment