Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DS731_RS19485 Genome accession   NZ_CP031010
Coordinates   4451986..4452564 (-) Length   192 a.a.
NCBI ID   WP_119502880.1    Uniprot ID   A0A385N0J5
Organism   Alteromonas sp. RKMC-009     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4446986..4457564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS731_RS19470 (DS731_19580) - 4449182..4450252 (-) 1071 WP_119503518.1 PepSY-associated TM helix domain-containing protein -
  DS731_RS19475 (DS731_19585) - 4450369..4451253 (-) 885 WP_119502878.1 LysR family transcriptional regulator -
  DS731_RS19480 (DS731_19590) - 4451281..4451781 (-) 501 WP_119502879.1 SRPBCC domain-containing protein -
  DS731_RS19485 (DS731_19595) ssb 4451986..4452564 (-) 579 WP_119502880.1 single-stranded DNA-binding protein Machinery gene
  DS731_RS19490 (DS731_19600) - 4453199..4455838 (+) 2640 WP_119502881.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20861.67 Da        Isoelectric Point: 5.2707

>NTDB_id=302808 DS731_RS19485 WP_119502880.1 4451986..4452564(-) (ssb) [Alteromonas sp. RKMC-009]
MATRGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQMQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGREGGGQGGQGGGGYQQRPQGGNQGGNQGGYSNNQGGGYQQRPQGNNQGG
GYGGGNQGGNQQGGNKPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=302808 DS731_RS19485 WP_119502880.1 4451986..4452564(-) (ssb) [Alteromonas sp. RKMC-009]
ATGGCAACGAGAGGCGTCAACAAAGTCATTTTGGTAGGAAACCTCGGGAACGATCCTGAAGTACGTTACATGCCAAATGG
AAACGCCGTGGCAAACCTGAGTCTGGCGACCAGTGAAAGCTGGAAGGATCAGCAAGGTCAGATGCAGGAGCGTACAGAGT
GGCATCGGTTAACCATGTACCGTCGACTGGCAGAAATTGCTGGTGAGTACCTGAAGAAAGGCTCACAAATTTACGTGGAA
GGTAAACTGCAAACCCGTAAATGGCAGGATCAACAAGGCCAGGATCGCTACACCACAGAAATCATTGTCGACCAGATGCA
AATGCTGGGCGGCCGCGAAGGTGGTGGTCAGGGCGGACAAGGTGGCGGTGGCTACCAGCAACGTCCACAAGGTGGAAATC
AGGGCGGCAACCAGGGTGGTTACAGCAACAACCAGGGCGGCGGTTATCAGCAACGTCCACAGGGTAACAATCAGGGTGGC
GGCTACGGCGGCGGCAATCAGGGTGGAAACCAGCAAGGTGGTAACAAGCCGCCTATGGCCGAGCCTGATTTTGACTTTGA
TGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385N0J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

57.592

99.479

0.573
  ssb Vibrio cholerae strain A1552

52.525

100

0.542
  ssb Neisseria gonorrhoeae MS11

46.597

99.479

0.464
  ssb Neisseria meningitidis MC58

46.842

98.958

0.464

Multiple sequence alignment