Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DT351_RS00035 | Genome accession | NZ_CP031003 |
| Coordinates | 8160..8672 (+) | Length | 170 a.a. |
| NCBI ID | WP_076786702.1 | Uniprot ID | A0A1X7QGR0 |
| Organism | Latilactobacillus curvatus strain TMW 1.1928 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3160..13672
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DT351_RS00025 (DT351_00025) | gyrA | 4995..7581 (+) | 2587 | Protein_4 | DNA gyrase subunit A | - |
| DT351_RS00030 (DT351_00030) | rpsF | 7824..8120 (+) | 297 | WP_076786704.1 | 30S ribosomal protein S6 | - |
| DT351_RS00035 (DT351_00035) | ssb | 8160..8672 (+) | 513 | WP_076786702.1 | single-stranded DNA-binding protein | Machinery gene |
| DT351_RS00040 (DT351_00040) | rpsR | 8703..8942 (+) | 240 | WP_004265822.1 | 30S ribosomal protein S18 | - |
| DT351_RS00045 (DT351_00045) | - | 9159..11189 (+) | 2031 | WP_076786700.1 | DHH family phosphoesterase | - |
| DT351_RS00050 (DT351_00050) | rplI | 11211..11663 (+) | 453 | WP_004265788.1 | 50S ribosomal protein L9 | - |
| DT351_RS00055 (DT351_00055) | dnaB | 11808..13211 (+) | 1404 | WP_172821848.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18594.13 Da Isoelectric Point: 4.6856
>NTDB_id=302760 DT351_RS00035 WP_076786702.1 8160..8672(+) (ssb) [Latilactobacillus curvatus strain TMW 1.1928]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=302760 DT351_RS00035 WP_076786702.1 8160..8672(+) (ssb) [Latilactobacillus curvatus strain TMW 1.1928]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAGCAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAGCAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
97.647 |
100 |
0.976 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56 |
100 |
0.576 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
62.353 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
33.155 |
100 |
0.365 |