Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | YEY1_RS18925 | Genome accession | NZ_CP030980 |
| Coordinates | 4016312..4016860 (-) | Length | 182 a.a. |
| NCBI ID | WP_005165221.1 | Uniprot ID | A0A0E1NLP2 |
| Organism | Yersinia enterocolitica subsp. palearctica strain Y1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4011312..4021860
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YEY1_RS18905 (YEY1_19040) | - | 4011900..4013267 (-) | 1368 | WP_005165212.1 | NCS2 family permease | - |
| YEY1_RS18910 (YEY1_19045) | - | 4013628..4014299 (-) | 672 | WP_005165214.1 | glutathione S-transferase | - |
| YEY1_RS18915 (YEY1_19050) | - | 4014594..4014893 (+) | 300 | WP_005165217.1 | helix-turn-helix transcriptional regulator | - |
| YEY1_RS18920 (YEY1_19055) | - | 4014895..4016223 (+) | 1329 | WP_005165219.1 | type II toxin-antitoxin system HipA family toxin | - |
| YEY1_RS18925 (YEY1_19060) | ssb | 4016312..4016860 (-) | 549 | WP_005165221.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| YEY1_RS18930 (YEY1_19065) | uvrA | 4017389..4020220 (+) | 2832 | WP_005165223.1 | excinuclease ABC subunit UvrA | - |
| YEY1_RS18935 (YEY1_19070) | - | 4020279..4020632 (-) | 354 | WP_005165225.1 | MmcQ/YjbR family DNA-binding protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 19084.10 Da Isoelectric Point: 4.9567
>NTDB_id=302703 YEY1_RS18925 WP_005165221.1 4016312..4016860(-) (ssb) [Yersinia enterocolitica subsp. palearctica strain Y1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=302703 YEY1_RS18925 WP_005165221.1 4016312..4016860(-) (ssb) [Yersinia enterocolitica subsp. palearctica strain Y1]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCACCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCACCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.913 |
100 |
0.747 |
| ssb | Glaesserella parasuis strain SC1401 |
55.729 |
100 |
0.588 |
| ssb | Neisseria gonorrhoeae MS11 |
46.809 |
100 |
0.484 |
| ssb | Neisseria meningitidis MC58 |
46.703 |
100 |
0.467 |