Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ETT53_RS02810 Genome accession   NZ_CP035446
Coordinates   525883..526548 (+) Length   221 a.a.
NCBI ID   WP_129321340.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm68.2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520883..531548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT53_RS02785 (ETT53_02785) - 521034..522434 (+) 1401 WP_011054832.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ETT53_RS02790 (ETT53_02790) - 522434..522811 (+) 378 WP_129321338.1 S1 RNA-binding domain-containing protein -
  ETT53_RS02795 (ETT53_02795) cysK 522829..523770 (-) 942 WP_011285046.1 cysteine synthase A -
  ETT53_RS02800 (ETT53_02800) - 523898..524530 (-) 633 WP_002988970.1 YigZ family protein -
  ETT53_RS02805 (ETT53_02805) comFA/cflA 524586..525911 (+) 1326 WP_129321339.1 DEAD/DEAH box helicase Machinery gene
  ETT53_RS02810 (ETT53_02810) comFC/cflB 525883..526548 (+) 666 WP_129321340.1 ComF family protein Machinery gene
  ETT53_RS02815 (ETT53_02815) hpf 526628..527176 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25193.44 Da        Isoelectric Point: 9.4626

>NTDB_id=302689 ETT53_RS02810 WP_129321340.1 525883..526548(+) (comFC/cflB) [Streptococcus pyogenes strain emm68.2]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLTKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=302689 ETT53_RS02810 WP_129321340.1 525883..526548(+) (comFC/cflB) [Streptococcus pyogenes strain emm68.2]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGACTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412