Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ETT56_RS09245 Genome accession   NZ_CP035443
Coordinates   1808385..1808981 (-) Length   198 a.a.
NCBI ID   WP_002992186.1    Uniprot ID   P0DF49
Organism   Streptococcus pyogenes strain emm58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1803385..1813981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT56_RS09210 (ETT56_09200) - 1803445..1803750 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  ETT56_RS09215 (ETT56_09205) ruvX 1803762..1804181 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  ETT56_RS09220 (ETT56_09210) - 1804178..1804447 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  ETT56_RS09225 (ETT56_09215) spx 1804561..1804959 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  ETT56_RS09230 (ETT56_09220) recA 1805250..1806386 (-) 1137 WP_023610714.1 recombinase RecA -
  ETT56_RS09235 (ETT56_09225) cinA 1806475..1807746 (-) 1272 WP_023610745.1 competence/damage-inducible protein A Machinery gene
  ETT56_RS09240 (ETT56_09230) - 1807815..1808375 (-) 561 WP_023610776.1 DNA-3-methyladenine glycosylase I -
  ETT56_RS09245 (ETT56_09235) ruvA 1808385..1808981 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA Machinery gene
  ETT56_RS09250 (ETT56_09240) - 1808983..1810203 (-) 1221 WP_002991361.1 MFS transporter -
  ETT56_RS09255 (ETT56_09245) hexB 1810214..1812196 (-) 1983 WP_023610727.1 DNA mismatch repair endonuclease MutL Machinery gene
  ETT56_RS09260 (ETT56_09250) - 1812291..1813436 (-) 1146 WP_063632873.1 site-specific integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21879.26 Da        Isoelectric Point: 6.8838

>NTDB_id=302457 ETT56_RS09245 WP_002992186.1 1808385..1808981(-) (ruvA) [Streptococcus pyogenes strain emm58]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKAKELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=302457 ETT56_RS09245 WP_002992186.1 1808385..1808981(-) (ruvA) [Streptococcus pyogenes strain emm58]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAAGCAAAAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA
CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DF49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.419