Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DTO10_RS11635 Genome accession   NZ_CP030926
Coordinates   2426639..2427169 (-) Length   176 a.a.
NCBI ID   WP_053348322.1    Uniprot ID   A0AAX0RZL2
Organism   Peribacillus butanolivorans strain PHB-7a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2421639..2432169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTO10_RS11615 (DTO10_11615) rplI 2422681..2423130 (-) 450 WP_053348326.1 50S ribosomal protein L9 -
  DTO10_RS11620 (DTO10_11620) - 2423127..2425097 (-) 1971 WP_098177047.1 DHH family phosphoesterase -
  DTO10_RS11625 (DTO10_11625) - 2425133..2426074 (-) 942 WP_098177046.1 YybS family protein -
  DTO10_RS11630 (DTO10_11630) rpsR 2426352..2426591 (-) 240 WP_053348323.1 30S ribosomal protein S18 -
  DTO10_RS11635 (DTO10_11635) ssbA 2426639..2427169 (-) 531 WP_053348322.1 single-stranded DNA-binding protein Machinery gene
  DTO10_RS11640 (DTO10_11640) rpsF 2427239..2427523 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  DTO10_RS11645 (DTO10_11645) ychF 2427732..2428832 (-) 1101 WP_053348320.1 redox-regulated ATPase YchF -
  DTO10_RS11650 (DTO10_11650) - 2428999..2429196 (-) 198 WP_116821253.1 DUF951 domain-containing protein -
  DTO10_RS11655 (DTO10_11655) - 2429217..2430053 (-) 837 WP_116821254.1 mechanosensitive ion channel family protein -
  DTO10_RS11660 (DTO10_11660) yyaC 2430447..2431082 (+) 636 WP_053348317.1 spore protease YyaC -
  DTO10_RS11665 (DTO10_11665) - 2431150..2431851 (-) 702 WP_053348316.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19548.20 Da        Isoelectric Point: 4.8282

>NTDB_id=302315 DTO10_RS11635 WP_053348322.1 2426639..2427169(-) (ssbA) [Peribacillus butanolivorans strain PHB-7a]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYNNNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPF
ANDGKTIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=302315 DTO10_RS11635 WP_053348322.1 2426639..2427169(-) (ssbA) [Peribacillus butanolivorans strain PHB-7a]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCTGTGGC
TACCTTTACTTTGGCTGTGAACCGTAGTTTTACGAATCAGTCGGGTGAACGTGAAGCAGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAAGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGAGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGAGGTCAAAGAAGTTATAACAACAATAATAACGGAAATG
ACAACAATTCGTATGGGCAAAATCCTAATCAGAATCAACGGAGCAACAACAACTACACTCGTGTAGATGATGATCCATTT
GCAAATGACGGTAAAACAATCGACATTTCAGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.715

100

0.699
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.227

0.381
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.381

Multiple sequence alignment