Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DRW48_RS07940 Genome accession   NZ_CP030918
Coordinates   1625594..1626094 (-) Length   166 a.a.
NCBI ID   WP_114075944.1    Uniprot ID   -
Organism   Paracoccus suum strain SC2-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1620594..1631094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRW48_RS07925 (DRW48_07925) - 1621877..1622236 (-) 360 WP_114075941.1 DUF1850 domain-containing protein -
  DRW48_RS07930 (DRW48_07930) - 1622233..1624335 (-) 2103 WP_114075942.1 TRAP transporter permease -
  DRW48_RS07935 (DRW48_07935) - 1624418..1625395 (-) 978 WP_114075943.1 TAXI family TRAP transporter solute-binding subunit -
  DRW48_RS07940 (DRW48_07940) ssb 1625594..1626094 (-) 501 WP_114075944.1 single-stranded DNA-binding protein Machinery gene
  DRW48_RS07945 (DRW48_07945) - 1626372..1626956 (+) 585 WP_114077445.1 lytic transglycosylase domain-containing protein -
  DRW48_RS07950 (DRW48_07950) - 1626974..1628077 (-) 1104 WP_114075945.1 calcium-binding protein -
  DRW48_RS07955 (DRW48_07955) - 1628086..1628685 (-) 600 WP_114075946.1 YSC84-related protein -
  DRW48_RS07960 (DRW48_07960) - 1628907..1629353 (-) 447 WP_114075947.1 YaiI/YqxD family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18038.64 Da        Isoelectric Point: 5.9697

>NTDB_id=302234 DRW48_RS07940 WP_114075944.1 1625594..1626094(-) (ssb) [Paracoccus suum strain SC2-6]
MAGSVNKVILVGNLGQDPEVRNFPNGGKVANLRIATSESWRDKNSGERREKTEWHSVAIYSEPLVRVAEQYLKKGAKIYV
EGQLETRKWQDQSGNDRYTTEVALRPFRSELTMLDGRGGGQGGQGGGDYDRGGSDWGGQSGGRNASGGGNQSGSSNRPEF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=302234 DRW48_RS07940 WP_114075944.1 1625594..1626094(-) (ssb) [Paracoccus suum strain SC2-6]
ATGGCTGGAAGCGTGAACAAGGTAATCCTGGTCGGGAACCTCGGGCAGGACCCTGAGGTCCGCAATTTCCCGAACGGCGG
CAAAGTGGCAAACTTGCGAATCGCCACCTCGGAAAGTTGGCGCGACAAGAACAGCGGCGAGCGCCGCGAAAAGACCGAAT
GGCACAGTGTCGCCATCTATTCCGAGCCCTTGGTGCGCGTCGCCGAGCAATACCTGAAGAAAGGCGCCAAGATCTACGTC
GAGGGCCAACTGGAAACCCGCAAGTGGCAGGACCAATCCGGCAACGACCGCTACACGACCGAGGTCGCGCTGCGTCCCTT
CCGCAGCGAGTTGACAATGCTGGATGGACGCGGGGGCGGCCAGGGTGGCCAAGGTGGCGGCGATTACGATCGTGGCGGCA
GCGATTGGGGCGGCCAGTCGGGCGGAAGAAACGCCTCGGGCGGCGGCAACCAGTCCGGCAGCAGCAACCGGCCCGAGTTC
GACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.023

100

0.542
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.536
  ssb Neisseria meningitidis MC58

37.989

100

0.41
  ssb Neisseria gonorrhoeae MS11

46.512

77.711

0.361

Multiple sequence alignment