Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC/celB   Type   Machinery gene
Locus tag   ETT60_RS05995 Genome accession   NZ_CP035439
Coordinates   1154954..1157197 (-) Length   747 a.a.
NCBI ID   WP_129284357.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm77     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1149954..1162197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT60_RS05965 (ETT60_05955) - 1150606..1151826 (+) 1221 WP_136038661.1 DUF3114 domain-containing protein -
  ETT60_RS09450 (ETT60_05960) - 1151940..1152798 (-) 859 Protein_1099 serine hydrolase -
  ETT60_RS05980 (ETT60_05970) - 1152747..1152974 (-) 228 WP_011054657.1 hypothetical protein -
  ETT60_RS05985 (ETT60_05975) sodA 1153141..1153746 (-) 606 WP_023612500.1 superoxide dismutase SodA -
  ETT60_RS05990 (ETT60_05980) holA 1153843..1154883 (-) 1041 WP_011888795.1 DNA polymerase III subunit delta -
  ETT60_RS05995 (ETT60_05985) comEC/celB 1154954..1157197 (-) 2244 WP_129284357.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ETT60_RS06000 (ETT60_05990) - 1157178..1157840 (-) 663 WP_002983967.1 ComEA family DNA-binding protein -
  ETT60_RS06005 (ETT60_05995) - 1158040..1158780 (-) 741 WP_002989170.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ETT60_RS06010 (ETT60_06000) - 1158898..1159674 (+) 777 WP_129284356.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ETT60_RS06015 (ETT60_06005) - 1159664..1159942 (+) 279 WP_011017953.1 GIY-YIG nuclease family protein -
  ETT60_RS06020 (ETT60_06010) - 1159966..1161966 (-) 2001 WP_136038662.1 potassium transporter Kup -

Sequence


Protein


Download         Length: 747 a.a.        Molecular weight: 85500.44 Da        Isoelectric Point: 9.7535

>NTDB_id=302041 ETT60_RS05995 WP_129284357.1 1154954..1157197(-) (comEC/celB) [Streptococcus pyogenes strain emm77]
MTFSWTKLVPLSKIQFAFLILVLFYQIHSPSWLTFLLSLSLICLLVKRLSKKEFLGVFAILSFCALFLLYQKQQLIQKLE
IQPVQITSVALVPDSIRINGDQLAVLGRHGKHSYQLFYRLKSQAEAQLFKKEHRWLVMHAKVTLEKAKEVRNFKGFNYQT
FLAYQGIYRIGKVEQIEQLEVISPESICDYLSSLRRRAIVHCQQHFPRPMSHYLTGLLFGYLDKSFGEMTDYYSQLGIIH
LFALSGMQVGFFLTCFRRVLLLLAVPLEWIKWIELPFACFYAALTGYSISVIRSLVQSQLRHLGIKGLDNLACTFLLVFL
WDAHFLMTVGGVLTFSYAFLLTVVTVEELSGAKRQLVQVLTISLGILPFLLFYFSSFNPMSMVLTGLLSYLFDLFILPLL
CLVFCLSPLVTVSICNHLFILLEKVIQFLGNTFNSSLVFGSPTSWHLLILVISFAIFYDYRQVRQRVITCGLVIALTLLS
VKYPLTNEVTFIDIGQGDSILVREWTGKNLLIDVGGRPFFSSKEHWRRGHHVANAQKTLIPYLKSRGIHTIDQLLVTHAD
TDHMGDIEVVAKAIRIKEILTSQGSLSHPSFVRRLRRLKCHVRVLAAGDQLPIMGSVLQVLYPWQLGDGKNNDSLVLYGR
LLNRTFLFTGDLEKEGENEIIKRYPQLRVDYLKAGHHGSNTSSSAAFLDHIQPKVAFISAGKNNRYQHPHRETLARLEDR
QITYYRTDTQGAIRLTGWTSWHLETVR

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=302041 ETT60_RS05995 WP_129284357.1 1154954..1157197(-) (comEC/celB) [Streptococcus pyogenes strain emm77]
ATGACATTTTCTTGGACTAAGCTAGTGCCCCTGTCAAAGATTCAATTTGCTTTTTTAATCTTGGTTCTCTTTTATCAAAT
CCATAGCCCTAGCTGGTTAACGTTTCTCCTTAGCCTTAGTTTGATTTGCTTACTTGTCAAGCGTTTGTCTAAAAAAGAAT
TTCTCGGTGTCTTTGCCATCCTTAGTTTCTGTGCTTTGTTTTTGCTGTATCAGAAACAGCAGTTGATTCAAAAACTGGAA
ATTCAGCCAGTACAAATAACCTCTGTAGCATTAGTTCCTGATAGTATTCGGATTAATGGTGATCAATTAGCTGTTCTTGG
ACGTCACGGGAAACATTCTTATCAGTTATTTTACCGTTTGAAAAGCCAAGCAGAAGCCCAATTGTTCAAGAAAGAGCACC
GTTGGTTAGTGATGCACGCAAAAGTGACATTGGAAAAAGCTAAGGAAGTTCGAAATTTTAAAGGCTTTAATTATCAGACT
TTTTTGGCTTATCAAGGAATTTACAGGATAGGGAAGGTAGAGCAAATAGAACAGCTTGAAGTGATTTCACCCGAGTCAAT
ATGTGACTATTTGTCCTCTTTAAGACGACGAGCCATTGTTCATTGCCAGCAGCATTTTCCAAGACCTATGTCTCACTACC
TGACGGGCCTCCTTTTTGGTTATTTAGATAAGTCGTTTGGTGAGATGACAGATTATTATAGTCAGTTGGGTATCATTCAT
CTCTTTGCTTTATCAGGGATGCAGGTTGGCTTCTTTCTTACTTGTTTTAGAAGGGTGTTGCTATTACTCGCAGTTCCTTT
GGAATGGATAAAATGGATAGAGCTTCCTTTTGCTTGCTTTTATGCCGCGTTGACAGGTTATAGTATTTCTGTTATTCGAA
GCCTCGTGCAGTCGCAGTTGCGTCATTTAGGAATAAAAGGATTAGACAATCTGGCTTGTACTTTTTTACTTGTCTTTTTA
TGGGATGCTCATTTCTTAATGACTGTTGGTGGCGTATTAACGTTTAGCTATGCTTTTTTGTTAACAGTGGTTACTGTTGA
AGAATTATCAGGAGCTAAAAGACAGTTGGTACAAGTCTTGACCATTTCCCTAGGAATATTACCATTTTTGCTCTTTTATT
TTTCTAGTTTTAACCCCATGTCAATGGTCTTAACAGGGCTCTTGTCTTATCTCTTTGACCTTTTTATTTTGCCCCTTCTT
TGTCTGGTTTTTTGTCTATCCCCTTTGGTGACTGTCTCAATATGTAACCATCTTTTTATTTTATTAGAAAAAGTCATTCA
ATTTCTCGGAAATACTTTCAATAGTTCCCTTGTTTTTGGAAGCCCGACCAGTTGGCACTTGCTTATCTTGGTGATTAGCT
TCGCTATTTTTTATGATTATCGGCAGGTGCGACAACGAGTTATCACTTGCGGTTTGGTTATAGCGTTGACGCTTTTGTCT
GTCAAATATCCTTTGACCAATGAAGTGACCTTTATCGACATTGGCCAGGGAGATAGTATTTTGGTGAGGGAGTGGACAGG
GAAAAATCTCTTAATAGATGTAGGTGGGCGCCCTTTCTTTTCTTCAAAAGAGCACTGGCGACGAGGACATCACGTAGCTA
ATGCTCAGAAAACCTTAATTCCTTACTTAAAAAGTAGAGGTATTCACACAATTGACCAACTATTAGTAACTCACGCAGAT
ACTGATCATATGGGGGATATCGAAGTGGTTGCCAAAGCTATTCGGATAAAGGAGATTTTGACTAGTCAAGGCAGTTTAAG
CCATCCAAGCTTTGTTAGGCGGCTAAGGCGTTTAAAATGTCACGTTAGGGTTTTAGCAGCTGGAGACCAGTTGCCTATTA
TGGGAAGTGTCTTACAGGTACTCTACCCTTGGCAGTTAGGGGACGGGAAAAATAACGATTCTTTGGTACTTTATGGCAGG
CTCTTAAATCGAACTTTTCTTTTCACAGGTGACTTGGAAAAAGAGGGGGAAAACGAGATCATAAAACGTTATCCTCAACT
AAGAGTAGATTATTTAAAAGCAGGTCACCATGGATCAAATACCTCTTCTAGTGCAGCTTTTTTAGACCATATTCAACCTA
AAGTGGCCTTTATTTCTGCTGGAAAAAATAACCGTTATCAGCATCCTCACAGAGAAACCTTAGCCCGTTTGGAAGACAGA
CAAATTACTTATTACCGAACGGATACGCAAGGAGCTATTCGTTTGACTGGTTGGACAAGCTGGCATCTTGAAACGGTCCG
TTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

46.185

100

0.462

  comEC/celB Streptococcus mitis NCTC 12261

46.113

99.866

0.461

  comEC/celB Streptococcus pneumoniae TIGR4

44.98

100

0.45

  comEC/celB Streptococcus pneumoniae Rx1

44.786

100

0.448

  comEC/celB Streptococcus pneumoniae D39

44.786

100

0.448

  comEC/celB Streptococcus pneumoniae R6

44.786

100

0.448

  comEC Lactococcus lactis subsp. cremoris KW2

40.537

99.732

0.404