Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ETT61_RS09615 Genome accession   NZ_CP035438
Coordinates   1868892..1869488 (-) Length   198 a.a.
NCBI ID   WP_002982180.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm22.8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1863892..1874488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT61_RS09580 (ETT61_09570) - 1863949..1864254 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  ETT61_RS09585 (ETT61_09575) ruvX 1864266..1864685 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  ETT61_RS09590 (ETT61_09580) - 1864682..1864951 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  ETT61_RS09595 (ETT61_09585) spx 1865066..1865464 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  ETT61_RS09600 (ETT61_09590) recA 1865757..1866893 (-) 1137 WP_023612576.1 recombinase RecA Machinery gene
  ETT61_RS09605 (ETT61_09595) cinA 1866982..1868253 (-) 1272 WP_136020115.1 competence/damage-inducible protein A Machinery gene
  ETT61_RS09610 (ETT61_09600) - 1868322..1868882 (-) 561 WP_136020114.1 DNA-3-methyladenine glycosylase I -
  ETT61_RS09615 (ETT61_09605) ruvA 1868892..1869488 (-) 597 WP_002982180.1 Holliday junction branch migration protein RuvA Machinery gene
  ETT61_RS09620 (ETT61_09610) - 1869490..1870710 (-) 1221 WP_136020113.1 MFS transporter -
  ETT61_RS09625 (ETT61_09615) hexB 1870721..1872703 (-) 1983 WP_136020112.1 DNA mismatch repair endonuclease MutL Machinery gene
  ETT61_RS09630 (ETT61_09620) - 1872798..1873943 (-) 1146 WP_032466283.1 site-specific integrase -
  ETT61_RS10465 (ETT61_09625) - 1874208..1874351 (+) 144 WP_011185066.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 6.2537

>NTDB_id=301977 ETT61_RS09615 WP_002982180.1 1868892..1869488(-) (ruvA) [Streptococcus pyogenes strain emm22.8]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=301977 ETT61_RS09615 WP_002982180.1 1868892..1869488(-) (ruvA) [Streptococcus pyogenes strain emm22.8]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGATGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424