Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ETT63_RS02660 Genome accession   NZ_CP035436
Coordinates   512304..512969 (+) Length   221 a.a.
NCBI ID   WP_136267537.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm89.14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 507304..517969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT63_RS02635 (ETT63_02635) - 507455..508855 (+) 1401 WP_136267533.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ETT63_RS02640 (ETT63_02640) - 508855..509232 (+) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  ETT63_RS02645 (ETT63_02645) cysK 509250..510191 (-) 942 WP_011888673.1 cysteine synthase A -
  ETT63_RS02650 (ETT63_02650) - 510319..510951 (-) 633 WP_009880468.1 YigZ family protein -
  ETT63_RS02655 (ETT63_02655) comFA/cflA 511007..512332 (+) 1326 WP_136267535.1 DEAD/DEAH box helicase Machinery gene
  ETT63_RS02660 (ETT63_02660) comFC/cflB 512304..512969 (+) 666 WP_136267537.1 ComF family protein Machinery gene
  ETT63_RS02665 (ETT63_02665) hpf 513049..513597 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25172.42 Da        Isoelectric Point: 9.4627

>NTDB_id=301744 ETT63_RS02660 WP_136267537.1 512304..512969(+) (comFC/cflB) [Streptococcus pyogenes strain emm89.14]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNHVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=301744 ETT63_RS02660 WP_136267537.1 512304..512969(+) (comFC/cflB) [Streptococcus pyogenes strain emm89.14]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCATGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae D39

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae R6

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

40.724

100

0.407

Multiple sequence alignment