Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ETT65_RS03865 Genome accession   NZ_CP035434
Coordinates   718633..719595 (+) Length   320 a.a.
NCBI ID   WP_002995771.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm75.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 713633..724595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT65_RS03845 (ETT65_03845) - 714342..715562 (-) 1221 WP_136075871.1 DUF3114 domain-containing protein -
  ETT65_RS03850 (ETT65_03850) queA 715569..716597 (-) 1029 WP_011284937.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ETT65_RS03855 (ETT65_03855) nagB 716799..717548 (+) 750 WP_038434150.1 glucosamine-6-phosphate deaminase -
  ETT65_RS03860 (ETT65_03860) - 717622..718338 (+) 717 WP_032462853.1 pseudouridine synthase -
  ETT65_RS03865 (ETT65_03865) coiA 718633..719595 (+) 963 WP_002995771.1 competence protein CoiA Machinery gene
  ETT65_RS03870 (ETT65_03870) pepF 719608..721413 (+) 1806 WP_002995768.1 oligoendopeptidase F Regulator
  ETT65_RS03875 (ETT65_03875) - 721788..722984 (+) 1197 WP_002995765.1 OFA family MFS transporter -
  ETT65_RS03880 (ETT65_03880) - 723050..723757 (+) 708 WP_002984000.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37748.20 Da        Isoelectric Point: 10.2013

>NTDB_id=301562 ETT65_RS03865 WP_002995771.1 718633..719595(+) (coiA) [Streptococcus pyogenes strain emm75.1]
MTKILTALDGKNQLISLVTQPISTKPPFCCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=301562 ETT65_RS03865 WP_002995771.1 718633..719595(+) (coiA) [Streptococcus pyogenes strain emm75.1]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTTGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.903

96.875

0.416
  coiA Streptococcus pneumoniae Rx1

41.613

96.875

0.403
  coiA Streptococcus pneumoniae D39

41.613

96.875

0.403
  coiA Streptococcus pneumoniae R6

41.613

96.875

0.403
  coiA Streptococcus pneumoniae TIGR4

41.613

96.875

0.403
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403

Multiple sequence alignment