Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DPR03_RS14185 Genome accession   NZ_CP030754
Coordinates   2960231..2960557 (-) Length   108 a.a.
NCBI ID   WP_071320971.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2948709..2966417 2960231..2960557 within 0


Gene organization within MGE regions


Location: 2948709..2966417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS14125 - 2948709..2949005 (-) 297 WP_071320978.1 hypothetical protein -
  DPR03_RS14130 - 2949557..2949808 (+) 252 WP_228715839.1 hypothetical protein -
  DPR03_RS14135 - 2950310..2951059 (+) 750 WP_071320977.1 hypothetical protein -
  DPR03_RS16055 - 2951121..2951369 (+) 249 WP_071320976.1 helix-turn-helix transcriptional regulator -
  DPR03_RS14145 - 2951366..2951731 (+) 366 WP_071320975.1 hypothetical protein -
  DPR03_RS14150 - 2951732..2955922 (+) 4191 WP_071320974.1 tape measure protein -
  DPR03_RS14155 - 2956073..2956579 (+) 507 WP_071320973.1 hypothetical protein -
  DPR03_RS14165 - 2956912..2957433 (+) 522 WP_071320972.1 hypothetical protein -
  DPR03_RS14170 - 2957545..2958552 (+) 1008 WP_071320987.1 hypothetical protein -
  DPR03_RS14180 - 2959228..2960085 (-) 858 WP_081409060.1 KilA-N domain-containing protein -
  DPR03_RS14185 ssb 2960231..2960557 (-) 327 WP_071320971.1 single-stranded DNA-binding protein Machinery gene
  DPR03_RS14190 - 2960890..2963355 (-) 2466 WP_071320970.1 DUF927 domain-containing protein -
  DPR03_RS14195 - 2963348..2963650 (-) 303 WP_071320969.1 hypothetical protein -
  DPR03_RS14200 - 2963653..2963934 (-) 282 WP_071320968.1 hypothetical protein -
  DPR03_RS14210 - 2964272..2964514 (-) 243 WP_071320967.1 hypothetical protein -
  DPR03_RS14215 - 2964518..2965225 (-) 708 WP_071320966.1 KilA-N domain-containing protein -
  DPR03_RS14220 - 2965236..2965604 (-) 369 WP_071320965.1 hypothetical protein -
  DPR03_RS14225 - 2965601..2965816 (-) 216 WP_004815246.1 helix-turn-helix domain-containing protein -
  DPR03_RS14230 - 2965821..2966417 (-) 597 WP_071320964.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12246.93 Da        Isoelectric Point: 10.2394

>NTDB_id=301342 DPR03_RS14185 WP_071320971.1 2960231..2960557(-) (ssb) [Acinetobacter schindleri strain H3]
MPNVNKVTVMGVLGRDPETKQFPNGGSITTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDKSGSEKEITEIRADELQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=301342 DPR03_RS14185 WP_071320971.1 2960231..2960557(-) (ssb) [Acinetobacter schindleri strain H3]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTATTAGGCCGTGACCCTGAAACAAAGCAATTCCCCAACGGTGGCAG
CATTACGACATTCAGCGTTGCAACTACTGAGTTTTGGAAGGATAAGACCACAGGCGAACGCAAAGAGGCCACAGAATGGC
ACAGAATCACCACCAGCAACCGCTTAGCCGAGATTGCTAGTAAGTACCTCAAGAAAGGCGGAAAGGTTTATATCGAAGGC
TCATTGCGTACTAGGAAGTGGAAGGACAAAAGCGGATCAGAAAAGGAAATAACCGAGATTCGAGCCGATGAGCTGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.556
  ssb Neisseria meningitidis MC58

50.943

98.148

0.5
  ssb Neisseria gonorrhoeae MS11

50.943

98.148

0.5
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491

Multiple sequence alignment