Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DPR03_RS13210 Genome accession   NZ_CP030754
Coordinates   2747765..2748346 (-) Length   193 a.a.
NCBI ID   WP_071320869.1    Uniprot ID   A0A1P8PGJ6
Organism   Acinetobacter schindleri strain H3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2742765..2753346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS13185 - 2742811..2744118 (-) 1308 WP_071320867.1 FAD-dependent oxidoreductase -
  DPR03_RS13190 - 2744533..2745411 (-) 879 WP_004813665.1 pirin family protein -
  DPR03_RS13195 ahpC 2745737..2746300 (-) 564 WP_004813667.1 alkyl hydroperoxide reductase subunit C -
  DPR03_RS13200 - 2746468..2747091 (-) 624 WP_071320868.1 TetR/AcrR family transcriptional regulator -
  DPR03_RS13205 - 2747227..2747710 (+) 484 Protein_2538 hotdog fold domain-containing protein -
  DPR03_RS13210 ssb 2747765..2748346 (-) 582 WP_071320869.1 single-stranded DNA-binding protein Machinery gene
  DPR03_RS13215 - 2748398..2749762 (-) 1365 WP_004813673.1 MFS transporter -
  DPR03_RS13220 - 2749917..2751005 (-) 1089 WP_071320870.1 DUF475 domain-containing protein -
  DPR03_RS13225 tenA 2751229..2751897 (+) 669 WP_008305148.1 thiaminase II -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20976.78 Da        Isoelectric Point: 6.4820

>NTDB_id=301341 DPR03_RS13210 WP_071320869.1 2747765..2748346(-) (ssb) [Acinetobacter schindleri strain H3]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQSDNGGFAQPRFNNNQGGYGNNNAGQQGYNAPQQGGFNNAPAGG
NGYGNNNPSGFAPKSAPAPVAAPAADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=301341 DPR03_RS13210 WP_071320869.1 2747765..2748346(-) (ssb) [Acinetobacter schindleri strain H3]
ATGCGTGGTGTAAATAAGGTTATTTTAGTAGGTACTTTAGGTCGAGATCCTGAAACAAAAACTTTCCCGAATGGGGGTTC
TCTCACTCAATTCTCTATCGCGACTAGTGATTCGTGGACGGATAAGAACACTGGTGAGCGTAAAGAGCAAACAGAATGGC
ACCGCATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAGTATCTACGTAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAGTGGACAGACCAAAGTGGTCAAGAGCGTTACACTACAGAAATCCGTGGTGAGCAGATGCAAAT
GCTGGATTCTGGCCGTCCTCAAGGTGAACAGTCAGACAATGGCGGTTTTGCACAGCCACGTTTCAACAATAACCAGGGCG
GCTATGGCAATAACAATGCTGGTCAACAAGGTTATAATGCACCACAGCAAGGTGGCTTCAATAATGCACCTGCGGGTGGT
AATGGCTATGGCAATAATAACCCAAGCGGTTTTGCGCCAAAATCTGCACCAGCTCCAGTTGCAGCGCCTGCAGCAGACCT
GGATGATGACTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8PGJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.515

100

0.508
  ssb Vibrio cholerae strain A1552

44.67

100

0.456
  ssb Neisseria gonorrhoeae MS11

41.053

98.446

0.404
  ssb Neisseria meningitidis MC58

41.053

98.446

0.404

Multiple sequence alignment