Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ETT68_RS06560 Genome accession   NZ_CP035431
Coordinates   1292006..1292671 (-) Length   221 a.a.
NCBI ID   WP_109991565.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm105     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1287006..1297671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT68_RS06555 (ETT68_06550) hpf 1291378..1291926 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ETT68_RS06560 (ETT68_06555) comFC/cflB 1292006..1292671 (-) 666 WP_109991565.1 ComF family protein Machinery gene
  ETT68_RS06565 (ETT68_06560) comFA/cflA 1292643..1293968 (-) 1326 WP_136018894.1 DEAD/DEAH box helicase Machinery gene
  ETT68_RS06570 (ETT68_06565) - 1294024..1294656 (+) 633 WP_009880468.1 YigZ family protein -
  ETT68_RS06575 (ETT68_06570) cysK 1294784..1295725 (+) 942 WP_010922535.1 cysteine synthase A -
  ETT68_RS06580 (ETT68_06575) - 1295743..1296120 (-) 378 WP_109991563.1 S1 RNA-binding domain-containing protein -
  ETT68_RS06585 (ETT68_06580) - 1296120..1297520 (-) 1401 WP_023079249.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25193.44 Da        Isoelectric Point: 9.4626

>NTDB_id=301300 ETT68_RS06560 WP_109991565.1 1292006..1292671(-) (comFC/cflB) [Streptococcus pyogenes strain emm105]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKSYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=301300 ETT68_RS06560 WP_109991565.1 1292006..1292671(-) (comFC/cflB) [Streptococcus pyogenes strain emm105]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAAGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412