Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1S65_RS02675 Genome accession   NZ_CP030750
Coordinates   557839..558381 (+) Length   180 a.a.
NCBI ID   WP_054893569.1    Uniprot ID   A0AAD0PD52
Organism   Pseudomonas putida strain NX-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 552839..563381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S65_RS02660 (C1S65_02660) bfr 552940..553404 (+) 465 WP_063542481.1 bacterioferritin -
  C1S65_RS02665 (C1S65_02665) uvrA 553471..556305 (-) 2835 WP_054893567.1 excinuclease ABC subunit UvrA -
  C1S65_RS02670 (C1S65_02670) - 556435..557829 (+) 1395 WP_063542485.1 MFS transporter -
  C1S65_RS02675 (C1S65_02675) ssb 557839..558381 (+) 543 WP_054893569.1 single-stranded DNA-binding protein Machinery gene
  C1S65_RS02680 (C1S65_02680) - 558606..562628 (+) 4023 WP_162714342.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20042.11 Da        Isoelectric Point: 5.9286

>NTDB_id=301248 C1S65_RS02675 WP_054893569.1 557839..558381(+) (ssb) [Pseudomonas putida strain NX-1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGQGGDQYNQGGGNYNQGGGQQQQYNQAPRQQAPRPQQAQQRPAP
QQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=301248 C1S65_RS02675 WP_054893569.1 557839..558381(+) (ssb) [Pseudomonas putida strain NX-1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTACTTGCGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGGCAGAAGGTCGAGCGCACCGAAT
GGCACCGTGTCTCGCTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAG
GGCAAGCTGCAGACTCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATTGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCGCAGGGCCAGGGTGGCGATCAGTACAACCAGGGCGGCGGCAACTACAACCAGGGCG
GTGGCCAGCAGCAACAGTACAACCAGGCCCCACGCCAGCAGGCGCCGCGTCCGCAGCAGGCGCAACAGCGCCCAGCGCCG
CAACAGCAGGCTCCGCAGCCTGCCGCTGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.801

100

0.561
  ssb Glaesserella parasuis strain SC1401

50.532

100

0.528
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.494
  ssb Neisseria meningitidis MC58

47.541

100

0.483

Multiple sequence alignment