Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DRH00_RS02910 Genome accession   NZ_CP030369
Coordinates   753420..753926 (-) Length   168 a.a.
NCBI ID   WP_011403299.1    Uniprot ID   A0A840EH66
Organism   Salinibacter ruber strain RM158     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 748420..758926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRH00_RS02890 - 749000..750535 (-) 1536 WP_118826037.1 acyl-CoA dehydrogenase family protein -
  DRH00_RS02900 ltrA 751015..752646 (-) 1632 WP_118826039.1 group II intron reverse transcriptase/maturase -
  DRH00_RS02910 ssb 753420..753926 (-) 507 WP_011403299.1 single-stranded DNA-binding protein Machinery gene
  DRH00_RS02915 - 754443..755258 (-) 816 WP_011403300.1 alpha/beta fold hydrolase -
  DRH00_RS02920 - 755761..756066 (+) 306 WP_011403301.1 YtxH domain-containing protein -
  DRH00_RS02925 - 756147..756971 (+) 825 WP_011403302.1 YaaA family protein -
  DRH00_RS02930 udk 757030..757701 (+) 672 WP_118826041.1 uridine kinase -
  DRH00_RS02935 - 757731..758501 (-) 771 WP_118826042.1 type III pantothenate kinase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18605.86 Da        Isoelectric Point: 3.8502

>NTDB_id=301054 DRH00_RS02910 WP_011403299.1 753420..753926(-) (ssb) [Salinibacter ruber strain RM158]
MARGVNKVILIGNLGDDPELRYTGSGTAVCNMSLATNETYTDSDGNEVQNTEWHDVVAWGRLGEICNEYLDKGSQVYFEG
KLQTRSWEDRDNNTRYSTEVKAQEMMFLDSNRQGGADMDGFDQTRGDESLDQTRQEQPAGSSGPQPGQQASSGGEDEDTF
EPDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=301054 DRH00_RS02910 WP_011403299.1 753420..753926(-) (ssb) [Salinibacter ruber strain RM158]
ATGGCACGCGGAGTTAACAAGGTCATTCTCATCGGCAACCTCGGCGACGATCCCGAACTGCGGTACACCGGCAGCGGGAC
GGCTGTCTGCAACATGTCGCTCGCGACCAACGAAACCTACACCGATAGCGACGGCAATGAGGTGCAAAACACCGAGTGGC
ACGACGTCGTGGCGTGGGGGCGGCTCGGAGAGATCTGCAACGAGTACCTTGACAAGGGCTCCCAGGTCTACTTCGAGGGC
AAGCTCCAAACCCGCTCTTGGGAGGACCGCGACAACAACACGCGCTACTCGACGGAGGTGAAGGCCCAGGAGATGATGTT
CCTCGACAGCAATCGCCAGGGCGGGGCGGACATGGACGGCTTCGACCAGACCCGTGGGGACGAATCCCTGGACCAAACCC
GCCAGGAGCAGCCCGCCGGCTCTTCCGGTCCGCAGCCTGGGCAGCAGGCGTCCTCCGGGGGCGAGGACGAGGACACGTTC
GAGCCGGACGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A840EH66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.506

100

0.482
  ssb Glaesserella parasuis strain SC1401

39.227

100

0.423
  ssb Neisseria gonorrhoeae MS11

40.571

100

0.423
  ssb Neisseria meningitidis MC58

37.714

100

0.393

Multiple sequence alignment