Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DRG99_RS02970 Genome accession   NZ_CP030364
Coordinates   751498..752004 (-) Length   168 a.a.
NCBI ID   WP_011403299.1    Uniprot ID   A0A840EH66
Organism   Salinibacter ruber strain M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 746498..757004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRG99_RS02950 - 747360..748058 (+) 699 WP_118830184.1 HAD-IA family hydrolase -
  DRG99_RS02955 - 748060..748689 (-) 630 WP_118830185.1 rhomboid family intramembrane serine protease -
  DRG99_RS02960 purQ 748829..749536 (-) 708 WP_103015630.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  DRG99_RS02965 - 749633..751168 (-) 1536 WP_112903066.1 acyl-CoA dehydrogenase family protein -
  DRG99_RS02970 ssb 751498..752004 (-) 507 WP_011403299.1 single-stranded DNA-binding protein Machinery gene
  DRG99_RS02975 - 752521..753336 (-) 816 WP_011403300.1 alpha/beta fold hydrolase -
  DRG99_RS02980 - 753814..754143 (+) 330 WP_013061050.1 YtxH domain-containing protein -
  DRG99_RS02985 - 754224..755048 (+) 825 WP_118830186.1 YaaA family protein -
  DRG99_RS02990 udk 755107..755778 (+) 672 WP_011403303.1 uridine kinase -
  DRG99_RS02995 - 755808..756578 (-) 771 WP_118830187.1 type III pantothenate kinase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18605.86 Da        Isoelectric Point: 3.8502

>NTDB_id=301047 DRG99_RS02970 WP_011403299.1 751498..752004(-) (ssb) [Salinibacter ruber strain M1]
MARGVNKVILIGNLGDDPELRYTGSGTAVCNMSLATNETYTDSDGNEVQNTEWHDVVAWGRLGEICNEYLDKGSQVYFEG
KLQTRSWEDRDNNTRYSTEVKAQEMMFLDSNRQGGADMDGFDQTRGDESLDQTRQEQPAGSSGPQPGQQASSGGEDEDTF
EPDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=301047 DRG99_RS02970 WP_011403299.1 751498..752004(-) (ssb) [Salinibacter ruber strain M1]
ATGGCACGCGGAGTCAACAAGGTTATTCTCATCGGCAACCTCGGCGACGATCCCGAACTGCGGTACACCGGCAGCGGGAC
GGCTGTCTGCAACATGTCGCTCGCGACCAACGAAACCTACACCGATAGCGACGGCAATGAGGTGCAAAACACCGAGTGGC
ACGACGTCGTGGCGTGGGGGCGGCTCGGAGAGATCTGCAACGAGTACCTTGACAAGGGCTCCCAGGTCTACTTCGAGGGC
AAGCTCCAAACCCGCTCTTGGGAGGACCGCGACAACAACACGCGCTACTCGACGGAGGTGAAGGCCCAGGAGATGATGTT
CCTCGACAGCAATCGCCAGGGCGGGGCGGACATGGACGGCTTCGACCAGACCCGTGGGGACGAATCCCTGGACCAAACCC
GCCAGGAGCAGCCCGCCGGCTCTTCCGGTCCGCAGCCTGGGCAGCAGGCGTCCTCCGGGGGCGAGGACGAGGACACGTTC
GAGCCGGACGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A840EH66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.506

100

0.482
  ssb Glaesserella parasuis strain SC1401

39.227

100

0.423
  ssb Neisseria gonorrhoeae MS11

40.571

100

0.423
  ssb Neisseria meningitidis MC58

37.714

100

0.393

Multiple sequence alignment