Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DRG95_RS03345 Genome accession   NZ_CP030361
Coordinates   796530..797036 (-) Length   168 a.a.
NCBI ID   WP_011403299.1    Uniprot ID   A0A840EH66
Organism   Salinibacter ruber strain SP73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 791530..802036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRG95_RS03320 - 792382..793080 (+) 699 WP_118826034.1 HAD family hydrolase -
  DRG95_RS03325 - 793082..793723 (-) 642 WP_118826035.1 rhomboid family intramembrane serine protease -
  DRG95_RS03330 purQ 793862..794569 (-) 708 WP_118826036.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  DRG95_RS03335 - 794666..796201 (-) 1536 WP_118826037.1 acyl-CoA dehydrogenase family protein -
  DRG95_RS16765 - 796294..796533 (+) 240 WP_162892251.1 hypothetical protein -
  DRG95_RS03345 ssb 796530..797036 (-) 507 WP_011403299.1 single-stranded DNA-binding protein Machinery gene
  DRG95_RS03350 - 797553..798368 (-) 816 WP_011403300.1 alpha/beta fold hydrolase -
  DRG95_RS03355 - 798847..799176 (+) 330 WP_013061050.1 YtxH domain-containing protein -
  DRG95_RS03360 - 799257..800081 (+) 825 WP_011403302.1 YaaA family protein -
  DRG95_RS03365 udk 800140..800811 (+) 672 WP_011403303.1 uridine kinase -
  DRG95_RS03370 - 800841..801611 (-) 771 WP_118828568.1 type III pantothenate kinase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18605.86 Da        Isoelectric Point: 3.8502

>NTDB_id=301040 DRG95_RS03345 WP_011403299.1 796530..797036(-) (ssb) [Salinibacter ruber strain SP73]
MARGVNKVILIGNLGDDPELRYTGSGTAVCNMSLATNETYTDSDGNEVQNTEWHDVVAWGRLGEICNEYLDKGSQVYFEG
KLQTRSWEDRDNNTRYSTEVKAQEMMFLDSNRQGGADMDGFDQTRGDESLDQTRQEQPAGSSGPQPGQQASSGGEDEDTF
EPDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=301040 DRG95_RS03345 WP_011403299.1 796530..797036(-) (ssb) [Salinibacter ruber strain SP73]
ATGGCACGCGGAGTTAACAAGGTCATTCTCATCGGCAACCTCGGCGACGATCCCGAACTGCGGTACACCGGCAGCGGGAC
GGCTGTCTGCAACATGTCGCTCGCGACCAACGAAACCTACACCGATAGCGACGGCAATGAGGTGCAAAACACCGAGTGGC
ACGACGTCGTGGCGTGGGGGCGGCTCGGAGAGATCTGCAACGAGTACCTTGACAAGGGCTCCCAGGTCTACTTCGAGGGC
AAGCTCCAAACCCGCTCTTGGGAGGACCGCGACAACAACACGCGCTACTCGACGGAGGTGAAGGCCCAGGAGATGATGTT
CCTCGACAGCAATCGCCAGGGCGGGGCGGACATGGACGGCTTCGACCAGACCCGTGGGGACGAATCCCTGGACCAAACCC
GCCAGGAGCAGCCCGCCGGCTCTTCCGGTCCGCAGCCTGGGCAGCAGGCGTCCTCCGGGGGCGAGGACGAGGACACGTTC
GAGCCGGACGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A840EH66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.506

100

0.482
  ssb Glaesserella parasuis strain SC1401

39.227

100

0.423
  ssb Neisseria gonorrhoeae MS11

40.571

100

0.423
  ssb Neisseria meningitidis MC58

37.714

100

0.393

Multiple sequence alignment