Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DRG92_RS02910 Genome accession   NZ_CP030357
Coordinates   736452..736958 (-) Length   168 a.a.
NCBI ID   WP_011403299.1    Uniprot ID   A0A840EH66
Organism   Salinibacter ruber strain SP38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 731452..741958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRG92_RS02885 - 732304..733002 (+) 699 WP_118826034.1 HAD family hydrolase -
  DRG92_RS02890 - 733004..733645 (-) 642 WP_118826035.1 rhomboid family intramembrane serine protease -
  DRG92_RS02895 purQ 733784..734491 (-) 708 WP_118826036.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  DRG92_RS02900 - 734588..736123 (-) 1536 WP_118826037.1 acyl-CoA dehydrogenase family protein -
  DRG92_RS02910 ssb 736452..736958 (-) 507 WP_011403299.1 single-stranded DNA-binding protein Machinery gene
  DRG92_RS02915 - 737475..738290 (-) 816 WP_011403300.1 alpha/beta fold hydrolase -
  DRG92_RS02920 - 738793..739098 (+) 306 WP_011403301.1 YtxH domain-containing protein -
  DRG92_RS02925 - 739179..740003 (+) 825 WP_011403302.1 YaaA family protein -
  DRG92_RS02930 udk 740089..740733 (+) 645 WP_240332989.1 uridine kinase -
  DRG92_RS02935 - 740763..741533 (-) 771 WP_118826042.1 type III pantothenate kinase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18605.86 Da        Isoelectric Point: 3.8502

>NTDB_id=301033 DRG92_RS02910 WP_011403299.1 736452..736958(-) (ssb) [Salinibacter ruber strain SP38]
MARGVNKVILIGNLGDDPELRYTGSGTAVCNMSLATNETYTDSDGNEVQNTEWHDVVAWGRLGEICNEYLDKGSQVYFEG
KLQTRSWEDRDNNTRYSTEVKAQEMMFLDSNRQGGADMDGFDQTRGDESLDQTRQEQPAGSSGPQPGQQASSGGEDEDTF
EPDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=301033 DRG92_RS02910 WP_011403299.1 736452..736958(-) (ssb) [Salinibacter ruber strain SP38]
ATGGCACGCGGAGTTAACAAGGTCATTCTCATCGGCAACCTCGGCGACGATCCCGAACTGCGGTACACCGGCAGCGGGAC
GGCTGTCTGCAACATGTCGCTCGCGACCAACGAAACCTACACCGATAGCGACGGCAATGAGGTGCAAAACACCGAGTGGC
ACGACGTCGTGGCGTGGGGGCGGCTCGGAGAGATCTGCAACGAGTACCTTGACAAGGGCTCCCAGGTCTACTTCGAGGGC
AAGCTCCAAACCCGCTCTTGGGAGGACCGCGACAACAACACGCGCTACTCGACGGAGGTGAAGGCCCAGGAGATGATGTT
CCTCGACAGCAATCGCCAGGGCGGGGCGGACATGGACGGCTTCGACCAGACCCGTGGGGACGAATCCCTGGACCAAACCC
GCCAGGAGCAGCCCGCCGGCTCTTCCGGTCCGCAGCCTGGGCAGCAGGCGTCCTCCGGGGGCGAGGACGAGGACACGTTC
GAGCCGGACGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A840EH66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.506

100

0.482
  ssb Glaesserella parasuis strain SC1401

39.227

100

0.423
  ssb Neisseria gonorrhoeae MS11

40.571

100

0.423
  ssb Neisseria meningitidis MC58

37.714

100

0.393

Multiple sequence alignment