Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DRG77_RS02675 Genome accession   NZ_CP030356
Coordinates   691773..692279 (-) Length   168 a.a.
NCBI ID   WP_011403299.1    Uniprot ID   A0A840EH66
Organism   Salinibacter ruber strain P18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 686773..697279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRG77_RS02655 - 687623..688321 (+) 699 WP_118838197.1 HAD family hydrolase -
  DRG77_RS02660 - 688323..688964 (-) 642 WP_118838198.1 rhomboid family intramembrane serine protease -
  DRG77_RS02665 purQ 689104..689811 (-) 708 WP_118826036.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  DRG77_RS02670 - 689908..691443 (-) 1536 WP_112903066.1 acyl-CoA dehydrogenase family protein -
  DRG77_RS02675 ssb 691773..692279 (-) 507 WP_011403299.1 single-stranded DNA-binding protein Machinery gene
  DRG77_RS02680 - 692795..693610 (-) 816 WP_118838199.1 alpha/beta fold hydrolase -
  DRG77_RS02685 - 694087..694416 (+) 330 WP_013061050.1 YtxH domain-containing protein -
  DRG77_RS02690 - 694497..695321 (+) 825 WP_011403302.1 YaaA family protein -
  DRG77_RS02695 udk 695381..696052 (+) 672 WP_118838200.1 uridine kinase -
  DRG77_RS02700 - 696082..696852 (-) 771 WP_118838201.1 type III pantothenate kinase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18605.86 Da        Isoelectric Point: 3.8502

>NTDB_id=301027 DRG77_RS02675 WP_011403299.1 691773..692279(-) (ssb) [Salinibacter ruber strain P18]
MARGVNKVILIGNLGDDPELRYTGSGTAVCNMSLATNETYTDSDGNEVQNTEWHDVVAWGRLGEICNEYLDKGSQVYFEG
KLQTRSWEDRDNNTRYSTEVKAQEMMFLDSNRQGGADMDGFDQTRGDESLDQTRQEQPAGSSGPQPGQQASSGGEDEDTF
EPDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=301027 DRG77_RS02675 WP_011403299.1 691773..692279(-) (ssb) [Salinibacter ruber strain P18]
ATGGCACGCGGAGTCAACAAGGTCATTCTCATCGGCAACCTCGGCGACGATCCCGAACTGCGGTACACCGGCAGCGGGAC
GGCTGTCTGCAACATGTCGCTCGCGACCAACGAAACCTACACCGATAGCGACGGCAATGAGGTGCAAAACACCGAGTGGC
ACGACGTCGTGGCGTGGGGGCGGCTCGGAGAGATCTGCAACGAGTACCTGGACAAGGGCTCCCAGGTCTACTTCGAGGGC
AAGCTCCAAACCCGCTCTTGGGAGGACCGCGACAACAACACGCGCTACTCGACGGAGGTGAAGGCCCAAGAGATGATGTT
CCTCGACAGCAATCGCCAGGGCGGGGCGGACATGGACGGCTTCGACCAGACCCGTGGGGACGAATCCCTGGACCAAACCC
GCCAGGAACAGCCCGCCGGCTCTTCCGGTCCGCAGCCTGGGCAGCAGGCGTCCTCCGGGGGCGAGGACGAGGACACGTTC
GAGCCGGACGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A840EH66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.506

100

0.482
  ssb Glaesserella parasuis strain SC1401

39.227

100

0.423
  ssb Neisseria gonorrhoeae MS11

40.571

100

0.423
  ssb Neisseria meningitidis MC58

37.714

100

0.393

Multiple sequence alignment