Detailed information NTG0301013

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CSC46_RS23910
• Genome accession: NZ_CP030351
• Coordinates: 5062315..5063187 (-)
• Length: 290 a.a.
• NCBI ID: WP_003161765.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain AR_460
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5057315..5068187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC46_RS23865 (CSC46_4834)	-	5058176..5058346 (-)	171	WP_003094672.1	DUF3094 family protein	-
CSC46_RS23870 (CSC46_4835)	-	5058372..5058821 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
CSC46_RS23875 (CSC46_4836)	-	5058818..5059447 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
CSC46_RS23880 (CSC46_4837)	-	5059580..5060005 (+)	426	WP_003161766.1	GNAT family N-acetyltransferase	-
CSC46_RS23885 (CSC46_4838)	-	5060002..5060472 (+)	471	WP_003094664.1	hypothetical protein	-
CSC46_RS23890 (CSC46_4839)	-	5060469..5061158 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
CSC46_RS23895 (CSC46_4840)	-	5061264..5061473 (+)	210	WP_020750398.1	hypothetical protein	-
CSC46_RS23900 (CSC46_4841)	yacG	5061510..5061710 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
CSC46_RS23905 (CSC46_4842)	coaE	5061707..5062318 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
CSC46_RS23910 (CSC46_4843)	pilD	5062315..5063187 (-)	873	WP_003161765.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
CSC46_RS23915 (CSC46_4844)	pilC	5063188..5064405 (-)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
CSC46_RS23920 (CSC46_4845)	pilB	5064409..5066109 (-)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CSC46_RS23925 (CSC46_4846)	-	5066340..5066807 (+)	468	WP_003161762.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=301013 CSC46_RS23910 WP_003161765.1 5062315..5063187(-) (pilD) [Pseudomonas aeruginosa strain AR_460]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=301013 CSC46_RS23910 WP_003161765.1 5062315..5063187(-) (pilD) [Pseudomonas aeruginosa strain AR_460]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469