Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CSC59_RS01920 | Genome accession | NZ_CP030326 |
| Coordinates | 370939..371409 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain AR_474 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 360595..402858 | 370939..371409 | within | 0 |
Gene organization within MGE regions
Location: 360595..402858
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC59_RS01830 (CSC59_0067) | - | 360595..361800 (-) | 1206 | WP_000264186.1 | tyrosine-type recombinase/integrase | - |
| CSC59_RS01835 (CSC59_0068) | - | 361911..362090 (+) | 180 | WP_000337827.1 | hypothetical protein | - |
| CSC59_RS01840 (CSC59_0069) | - | 362216..362707 (-) | 492 | WP_001077638.1 | hypothetical protein | - |
| CSC59_RS01845 (CSC59_0070) | - | 362728..363189 (-) | 462 | WP_000525016.1 | hypothetical protein | - |
| CSC59_RS01850 (CSC59_0071) | - | 363202..363525 (-) | 324 | WP_001260487.1 | helix-turn-helix transcriptional regulator | - |
| CSC59_RS01855 (CSC59_0072) | - | 363689..363937 (+) | 249 | WP_000272858.1 | helix-turn-helix transcriptional regulator | - |
| CSC59_RS15530 (CSC59_0073) | - | 363952..364113 (+) | 162 | WP_001153175.1 | hypothetical protein | - |
| CSC59_RS01860 (CSC59_0074) | - | 364106..364342 (-) | 237 | WP_000856472.1 | hypothetical protein | - |
| CSC59_RS01865 (CSC59_0075) | - | 364793..364978 (+) | 186 | WP_000933365.1 | helix-turn-helix transcriptional regulator | - |
| CSC59_RS01870 (CSC59_0076) | - | 364980..365732 (+) | 753 | WP_001148634.1 | phage antirepressor KilAC domain-containing protein | - |
| CSC59_RS15600 | - | 365748..365846 (+) | 99 | Protein_322 | hypothetical protein | - |
| CSC59_RS01880 (CSC59_0078) | - | 365996..366259 (+) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| CSC59_RS01885 | - | 366271..366432 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| CSC59_RS01890 (CSC59_0079) | - | 366527..366829 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| CSC59_RS01895 (CSC59_0080) | - | 366834..367094 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| CSC59_RS01900 (CSC59_0081) | - | 367103..367366 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| CSC59_RS01905 (CSC59_0082) | - | 367375..369318 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| CSC59_RS01910 (CSC59_0083) | - | 369320..370240 (+) | 921 | WP_000180599.1 | recombinase RecT | - |
| CSC59_RS01915 (CSC59_0084) | - | 370321..370938 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| CSC59_RS01920 (CSC59_0085) | ssbA | 370939..371409 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| CSC59_RS01925 (CSC59_0086) | - | 371439..372332 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| CSC59_RS01930 (CSC59_0087) | - | 372339..372557 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| CSC59_RS01935 (CSC59_0088) | - | 372566..372970 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CSC59_RS01940 (CSC59_0089) | - | 372983..373351 (+) | 369 | WP_000101282.1 | SA1788 family PVL leukocidin-associated protein | - |
| CSC59_RS01945 (CSC59_0090) | - | 373355..373597 (+) | 243 | WP_000132210.1 | SAV1978 family virulence-associated passenger protein | - |
| CSC59_RS01950 (CSC59_0091) | - | 373611..373817 (+) | 207 | WP_000693995.1 | hypothetical protein | - |
| CSC59_RS01955 (CSC59_0092) | - | 373820..374221 (+) | 402 | WP_000695762.1 | hypothetical protein | - |
| CSC59_RS01960 (CSC59_0093) | - | 374218..374565 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| CSC59_RS01965 (CSC59_0094) | - | 374562..374870 (+) | 309 | WP_000144711.1 | hypothetical protein | - |
| CSC59_RS01970 (CSC59_0095) | - | 374863..375111 (+) | 249 | WP_001065026.1 | DUF1024 family protein | - |
| CSC59_RS01975 (CSC59_0096) | - | 375104..375640 (+) | 537 | WP_000185682.1 | dUTPase | - |
| CSC59_RS01980 (CSC59_0097) | - | 375677..375913 (+) | 237 | WP_000195831.1 | DUF1381 domain-containing protein | - |
| CSC59_RS01985 (CSC59_0098) | - | 375938..376174 (+) | 237 | WP_000483479.1 | hypothetical protein | - |
| CSC59_RS01990 (CSC59_0099) | - | 376164..376553 (+) | 390 | WP_001580341.1 | hypothetical protein | - |
| CSC59_RS01995 (CSC59_0100) | - | 376550..376723 (+) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| CSC59_RS02000 (CSC59_0101) | - | 376724..377089 (+) | 366 | WP_000989954.1 | hypothetical protein | - |
| CSC59_RS02005 (CSC59_0102) | - | 377090..377236 (+) | 147 | WP_000989960.1 | hypothetical protein | - |
| CSC59_RS02010 (CSC59_0103) | - | 377260..377682 (+) | 423 | WP_000162702.1 | RinA family phage transcriptional activator | - |
| CSC59_RS15535 (CSC59_0104) | - | 378010..378504 (+) | 495 | WP_000594082.1 | terminase small subunit | - |
| CSC59_RS02020 (CSC59_0105) | - | 378497..379705 (+) | 1209 | WP_000606640.1 | PBSX family phage terminase large subunit | - |
| CSC59_RS02025 (CSC59_0106) | - | 379719..381137 (+) | 1419 | WP_000283553.1 | phage portal protein | - |
| CSC59_RS02030 (CSC59_0107) | - | 381076..382056 (+) | 981 | WP_001795666.1 | phage head morphogenesis protein | - |
| CSC59_RS02035 (CSC59_0108) | - | 382154..382750 (+) | 597 | WP_000366932.1 | phage scaffolding protein | - |
| CSC59_RS02040 (CSC59_0109) | - | 382771..383595 (+) | 825 | WP_001135558.1 | N4-gp56 family major capsid protein | - |
| CSC59_RS02045 (CSC59_0110) | - | 383612..383938 (+) | 327 | WP_000278799.1 | Rho termination factor N-terminal domain-containing protein | - |
| CSC59_RS02050 (CSC59_0111) | - | 383938..384252 (+) | 315 | WP_000338935.1 | phage head-tail connector protein | - |
| CSC59_RS02055 (CSC59_0112) | - | 384245..384580 (+) | 336 | WP_000482986.1 | phage head closure protein | - |
| CSC59_RS02060 (CSC59_0113) | - | 384567..384980 (+) | 414 | WP_001151335.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| CSC59_RS02065 (CSC59_0114) | - | 384993..385430 (+) | 438 | WP_000270197.1 | DUF3168 domain-containing protein | - |
| CSC59_RS02070 (CSC59_0115) | - | 385417..385977 (+) | 561 | WP_000046067.1 | hypothetical protein | - |
| CSC59_RS02075 (CSC59_0116) | - | 386039..386533 (+) | 495 | WP_000141082.1 | tail assembly chaperone | - |
| CSC59_RS02080 (CSC59_0117) | - | 386554..386895 (+) | 342 | WP_001580347.1 | hypothetical protein | - |
| CSC59_RS02085 (CSC59_0118) | - | 386898..389867 (+) | 2970 | WP_000414235.1 | terminase | - |
| CSC59_RS02090 (CSC59_0119) | - | 389882..390817 (+) | 936 | WP_000560196.1 | phage tail domain-containing protein | - |
| CSC59_RS02095 (CSC59_0120) | - | 390828..392714 (+) | 1887 | WP_001144708.1 | SGNH/GDSL hydrolase family protein | - |
| CSC59_RS02100 (CSC59_0121) | - | 392727..394625 (+) | 1899 | WP_000323256.1 | hypothetical protein | - |
| CSC59_RS02105 (CSC59_0122) | - | 394625..396448 (+) | 1824 | WP_000259638.1 | phage baseplate upper protein | - |
| CSC59_RS02110 (CSC59_0123) | - | 396448..396825 (+) | 378 | WP_000705893.1 | DUF2977 domain-containing protein | - |
| CSC59_RS02115 (CSC59_0124) | - | 396829..397002 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| CSC59_RS02120 (CSC59_0125) | - | 397043..397342 (+) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| CSC59_RS02125 (CSC59_0126) | - | 397479..399353 (+) | 1875 | WP_000524044.1 | glucosaminidase domain-containing protein | - |
| CSC59_RS02130 (CSC59_0127) | - | 399366..400538 (+) | 1173 | WP_000276655.1 | BppU family phage baseplate upper protein | - |
| CSC59_RS02135 (CSC59_0128) | - | 400544..400939 (+) | 396 | WP_000398864.1 | hypothetical protein | - |
| CSC59_RS02140 (CSC59_0129) | - | 400995..401432 (+) | 438 | WP_000354129.1 | phage holin | - |
| CSC59_RS02145 (CSC59_0130) | - | 401413..402858 (+) | 1446 | WP_001148113.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=300823 CSC59_RS01920 WP_000934759.1 370939..371409(+) (ssbA) [Staphylococcus aureus strain AR_474]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=300823 CSC59_RS01920 WP_000934759.1 370939..371409(+) (ssbA) [Staphylococcus aureus strain AR_474]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |