Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   SPH_RS14095 Genome accession   NC_010380
Coordinates   1899967..1900788 (-) Length   273 a.a.
NCBI ID   WP_000601691.1    Uniprot ID   -
Organism   Streptococcus pneumoniae Hungary19A-6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1894967..1905788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH_RS10040 (SPH_2055) - 1895466..1895783 (-) 318 WP_000615767.1 thioredoxin family protein -
  SPH_RS10045 (SPH_2056) - 1895780..1896079 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  SPH_RS14080 - 1896317..1896397 (-) 81 WP_223200442.1 hypothetical protein -
  SPH_RS14085 - 1896404..1896549 (-) 146 Protein_1905 cell wall-binding protein -
  SPH_RS10055 (SPH_2057) - 1896761..1897435 (-) 675 WP_000725722.1 membrane protein -
  SPH_RS10060 (SPH_2058) - 1897441..1897887 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  SPH_RS10065 (SPH_2059) - 1898001..1898504 (-) 504 WP_000800939.1 phosphatase PAP2 family protein -
  SPH_RS10070 (SPH_2060) - 1898501..1898863 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  SPH_RS14090 (SPH_2061) rcrQ 1898929..1899960 (-) 1032 WP_000346795.1 ATP-binding cassette domain-containing protein Regulator
  SPH_RS14095 (SPH_2062) rcrP 1899967..1900788 (-) 822 WP_000601691.1 ABC transporter permease Regulator
  SPH_RS10085 (SPH_2063) - 1900805..1901275 (-) 471 WP_000360532.1 MarR family winged helix-turn-helix transcriptional regulator -
  SPH_RS10090 (SPH_2064) - 1901399..1902115 (-) 717 WP_000532874.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SPH_RS10095 (SPH_2065) ply 1902996..1904411 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  SPH_RS10100 (SPH_2066) - 1904422..1904832 (-) 411 WP_000595757.1 hypothetical protein -
  SPH_RS10105 (SPH_2067) - 1904825..1905433 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30487.14 Da        Isoelectric Point: 5.9135

>NTDB_id=30063 SPH_RS14095 WP_000601691.1 1899967..1900788(-) (rcrP) [Streptococcus pneumoniae Hungary19A-6]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMPFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLMRTTNDITQVQMLITMGLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=30063 SPH_RS14095 WP_000601691.1 1899967..1900788(-) (rcrP) [Streptococcus pneumoniae Hungary19A-6]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGATGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTAAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.193

100

0.597


Multiple sequence alignment