Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SPH_RS11930 Genome accession   NC_010380
Coordinates   2244841..2245599 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae Hungary19A-6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2239841..2250599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH_RS11900 (SPH_2432) comE 2240439..2241191 (-) 753 WP_000866070.1 competence system response regulator transcription factor ComE Regulator
  SPH_RS11905 (SPH_2433) comD/comD1 2241188..2242513 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  SPH_RS11910 (SPH_2434) comC/comC1 2242534..2242659 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  SPH_RS11920 (SPH_2437) rlmH 2242941..2243419 (-) 479 Protein_2239 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SPH_RS11925 (SPH_2438) htrA 2243602..2244783 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  SPH_RS11930 (SPH_2439) spo0J 2244841..2245599 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=30061 SPH_RS11930 WP_000410383.1 2244841..2245599(+) (spo0J) [Streptococcus pneumoniae Hungary19A-6]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=30061 SPH_RS11930 WP_000410383.1 2244841..2245599(+) (spo0J) [Streptococcus pneumoniae Hungary19A-6]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment