Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ETA15_RS14675 Genome accession   NZ_CP035403
Coordinates   2709458..2710153 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain SRCM103581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2704458..2715153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS14650 (ETA15_14650) minD 2705394..2706200 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  ETA15_RS14655 (ETA15_14655) minC 2706202..2706882 (-) 681 WP_017696329.1 septum site-determining protein MinC -
  ETA15_RS14660 (ETA15_14660) mreD 2706935..2707453 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ETA15_RS14665 (ETA15_14665) mreC 2707450..2708322 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ETA15_RS14670 (ETA15_14670) mreB 2708353..2709366 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ETA15_RS14675 (ETA15_14675) ysxA/radC 2709458..2710153 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  ETA15_RS14680 (ETA15_14680) maf 2710190..2710759 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ETA15_RS14685 (ETA15_14685) spoIIB 2710912..2711910 (-) 999 WP_041339276.1 stage II sporulation protein SpoIIB -
  ETA15_RS14690 (ETA15_14690) comC 2712044..2712790 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  ETA15_RS14695 (ETA15_14695) folC 2712931..2714223 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=299822 ETA15_RS14675 WP_003246034.1 2709458..2710153(-) (ysxA/radC) [Bacillus subtilis strain SRCM103581]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=299822 ETA15_RS14675 WP_003246034.1 2709458..2710153(-) (ysxA/radC) [Bacillus subtilis strain SRCM103581]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTGGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424