Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C2G36_RS10670 Genome accession   NZ_CP030138
Coordinates   2039434..2039904 (-) Length   156 a.a.
NCBI ID   WP_000934759.1    Uniprot ID   A0A2I7Y8V1
Organism   Staphylococcus aureus strain M48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2034434..2044904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2G36_RS10605 (C2G36_10610) - 2034583..2034819 (-) 237 WP_000608278.1 hypothetical protein -
  C2G36_RS10610 (C2G36_10615) - 2034918..2035118 (-) 201 WP_000195821.1 DUF1381 domain-containing protein -
  C2G36_RS10615 (C2G36_10620) - 2035155..2035691 (-) 537 WP_000185663.1 dUTPase -
  C2G36_RS10620 (C2G36_10625) - 2035684..2035932 (-) 249 WP_001065026.1 DUF1024 family protein -
  C2G36_RS10625 (C2G36_10630) - 2035925..2036233 (-) 309 WP_000144710.1 hypothetical protein -
  C2G36_RS10630 (C2G36_10635) - 2036230..2036577 (-) 348 WP_000979209.1 YopX family protein -
  C2G36_RS10635 (C2G36_10640) - 2036574..2036975 (-) 402 WP_000695762.1 hypothetical protein -
  C2G36_RS10640 (C2G36_10645) - 2036988..2037236 (-) 249 WP_000178986.1 SAV1978 family virulence-associated passenger protein -
  C2G36_RS10645 (C2G36_10650) - 2037233..2037490 (-) 258 WP_000111491.1 DUF3310 domain-containing protein -
  C2G36_RS10650 (C2G36_10655) - 2037490..2037862 (-) 373 Protein_1961 SA1788 family PVL leukocidin-associated protein -
  C2G36_RS10655 (C2G36_10660) - 2037875..2038279 (-) 405 WP_000401969.1 RusA family crossover junction endodeoxyribonuclease -
  C2G36_RS10660 (C2G36_10665) - 2038289..2038504 (-) 216 Protein_1963 hypothetical protein -
  C2G36_RS10665 (C2G36_10670) - 2038511..2039404 (-) 894 WP_000148333.1 DnaD domain-containing protein -
  C2G36_RS10670 (C2G36_10675) ssbA 2039434..2039904 (-) 471 WP_000934759.1 single-stranded DNA-binding protein Machinery gene
  C2G36_RS10675 (C2G36_10680) - 2039905..2040522 (-) 618 WP_064135358.1 MBL fold metallo-hydrolase -
  C2G36_RS10680 (C2G36_10685) - 2040603..2041523 (-) 921 WP_000180598.1 recombinase RecT -
  C2G36_RS10685 (C2G36_10690) - 2041525..2043468 (-) 1944 WP_000700555.1 AAA family ATPase -
  C2G36_RS10690 (C2G36_10695) - 2043477..2043740 (-) 264 WP_001205732.1 hypothetical protein -
  C2G36_RS10695 (C2G36_10700) - 2043749..2044009 (-) 261 WP_031825655.1 DUF1108 family protein -
  C2G36_RS10700 (C2G36_10705) - 2044014..2044316 (-) 303 WP_044131919.1 DUF2482 family protein -
  C2G36_RS10705 (C2G36_10710) - 2044410..2044571 (-) 162 WP_000048130.1 DUF1270 family protein -
  C2G36_RS10710 (C2G36_10715) - 2044564..2044785 (-) 222 WP_000594790.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=299639 C2G36_RS10670 WP_000934759.1 2039434..2039904(-) (ssbA) [Staphylococcus aureus strain M48]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=299639 C2G36_RS10670 WP_000934759.1 2039434..2039904(-) (ssbA) [Staphylococcus aureus strain M48]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment