Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SHAL_RS20460 Genome accession   NC_010334
Coordinates   4827851..4829371 (+) Length   506 a.a.
NCBI ID   WP_012279016.1    Uniprot ID   B0TJT1
Organism   Shewanella halifaxensis HAW-EB4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4822851..4834371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHAL_RS20440 (Shal_3955) - 4823749..4824417 (+) 669 WP_012279012.1 response regulator transcription factor -
  SHAL_RS20445 (Shal_3956) - 4824389..4825645 (+) 1257 WP_012279013.1 HAMP domain-containing sensor histidine kinase -
  SHAL_RS20450 (Shal_3957) - 4825989..4826825 (+) 837 WP_012279014.1 DUF6236 family protein -
  SHAL_RS20455 (Shal_3958) - 4827395..4827610 (+) 216 WP_012279015.1 hypothetical protein -
  SHAL_RS20460 (Shal_3959) comM 4827851..4829371 (+) 1521 WP_012279016.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SHAL_RS20465 (Shal_3960) - 4829827..4831350 (+) 1524 WP_223296224.1 EAL domain-containing protein -
  SHAL_RS20470 (Shal_3961) - 4831588..4832493 (+) 906 WP_012279018.1 acyltransferase -
  SHAL_RS20475 (Shal_3962) - 4832501..4833451 (+) 951 WP_012279019.1 acyltransferase -
  SHAL_RS20480 (Shal_3963) - 4833771..4834172 (+) 402 WP_012279020.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55100.17 Da        Isoelectric Point: 8.2718

>NTDB_id=29959 SHAL_RS20460 WP_012279016.1 4827851..4829371(+) (comM) [Shewanella halifaxensis HAW-EB4]
MPIACVATRASHGVQAPAVQVEVHLSNGLPAFSLVGLPEASVKEAKERVRSALINAGFEFPMRRITVNLAPADLPKHGGR
YDLPIAIGILAASKQIPLKSVEQHEFVGELALTGHVRYCQGMLPVIVDASKQNSTLVLPVDNREDAELVGFEKVLFATHL
QSLAAYLHGQSQLPSIDLNLEWLSQDKTKPLSCMSEVVGQHQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMQLLPQ
LAYSEALEVAAIHSVAGHNIKPDSFYQRPFRSPHHTCSAISLVGGGAQPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVSISRAAAKLTFASRFQLIAAMNPSPCGDSDNGRSSNEQIQRYLSKLSGPFLDRFDLTIDVPKLPLGALNNQNT
QAETSATIAKRVQQARETQLARSGVLNSELTGKQLKQEAKFDDKDLIFLEQSVNQLGLSVRSYHRLQRVARTIADLQQEP
NVSRSHIAQALGYRAMDRLLASLSRQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=29959 SHAL_RS20460 WP_012279016.1 4827851..4829371(+) (comM) [Shewanella halifaxensis HAW-EB4]
ATGCCCATAGCCTGTGTTGCCACCCGTGCTAGCCACGGCGTCCAAGCCCCTGCCGTACAAGTCGAAGTCCATCTCAGCAA
CGGTCTGCCTGCATTTAGCCTAGTTGGACTACCTGAAGCCTCTGTCAAAGAGGCGAAAGAGCGAGTGCGTAGCGCGCTTA
TCAACGCCGGATTTGAATTCCCCATGCGCCGCATCACGGTTAACCTTGCACCGGCTGACCTGCCTAAACATGGTGGTCGC
TACGATCTGCCTATCGCCATCGGTATCCTCGCGGCCTCGAAGCAGATCCCACTCAAATCTGTCGAGCAACATGAATTTGT
CGGTGAACTGGCACTGACTGGCCATGTGCGTTACTGCCAAGGGATGCTACCTGTCATCGTCGATGCCAGCAAACAAAATA
GCACCTTAGTCCTCCCGGTAGATAATCGTGAAGACGCCGAACTCGTGGGCTTTGAAAAGGTCCTTTTTGCCACTCACCTG
CAATCTCTAGCCGCCTACCTACACGGCCAATCGCAACTCCCTAGTATCGACCTTAATCTTGAGTGGTTATCACAAGATAA
AACTAAGCCGTTATCTTGTATGAGTGAAGTGGTGGGTCAACATCAAGCCAAACAAGCATTAGAGATAGCCGCTGCTGGCA
ACCATAACCTGCTGATGCTGGGGCCACCTGGAACCGGTAAGACCATGCTCGCTAGCCGTATGATGCAGCTTCTACCACAG
TTAGCCTATAGCGAAGCCTTAGAGGTCGCTGCCATTCACTCTGTTGCAGGACACAACATTAAACCTGATAGTTTTTATCA
GCGTCCCTTTAGGAGCCCGCACCATACCTGCTCGGCTATCTCTTTGGTGGGCGGCGGTGCCCAGCCCAAACCCGGTGAAA
TATCCTTAGCTCATAGGGGCGTACTTTTCTTAGATGAGGTGGCGGAGTTTCCAAGAAAAGTCCTCGATTGCCTGCGTGAG
CCGATGGAAACCGGTGAGGTGAGTATCTCCCGTGCGGCGGCCAAACTGACCTTTGCCAGTCGCTTCCAGCTCATCGCCGC
CATGAACCCTAGTCCTTGCGGTGATAGCGACAATGGCAGATCCAGTAATGAGCAGATCCAGCGCTATCTTTCAAAGTTAT
CAGGGCCTTTTCTCGACCGCTTTGACTTAACTATAGACGTGCCCAAACTGCCCTTAGGCGCACTCAATAACCAAAACACA
CAAGCCGAAACCAGTGCGACAATTGCCAAGCGCGTACAACAAGCACGAGAGACGCAACTCGCTCGCTCCGGCGTGCTCAA
CAGTGAACTAACAGGCAAACAGCTTAAACAAGAGGCTAAGTTTGATGATAAAGACCTGATTTTTTTGGAGCAAAGCGTCA
ATCAACTCGGGCTGTCTGTACGCAGTTATCACCGTCTACAGCGGGTCGCTCGCACCATAGCCGATCTGCAACAAGAGCCC
AATGTCAGCCGCTCTCACATCGCCCAAGCGCTAGGATACCGCGCCATGGATCGACTACTCGCCTCGCTATCAAGGCAGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0TJT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.03

100

0.551
  comM Vibrio cholerae strain A1552

54.086

100

0.549
  comM Glaesserella parasuis strain SC1401

53.725

100

0.541
  comM Vibrio campbellii strain DS40M4

53.125

100

0.538
  comM Legionella pneumophila str. Paris

47.921

99.802

0.478
  comM Legionella pneumophila strain ERS1305867

47.921

99.802

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.254

99.605

0.431

Multiple sequence alignment