Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   DP112_RS08085 Genome accession   NZ_CP030125
Coordinates   1624161..1624805 (+) Length   214 a.a.
NCBI ID   WP_105134882.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619161..1629805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS08065 (DP112_08065) - 1620160..1621905 (-) 1746 WP_029171494.1 site-specific DNA-methyltransferase -
  DP112_RS08070 (DP112_08070) - 1622094..1622639 (-) 546 WP_114866733.1 class I SAM-dependent methyltransferase -
  DP112_RS08075 (DP112_08075) - 1622649..1623167 (-) 519 WP_114866734.1 TetR/AcrR family transcriptional regulator -
  DP112_RS08080 (DP112_08080) - 1623289..1624107 (+) 819 WP_114866735.1 cation diffusion facilitator family transporter -
  DP112_RS08085 (DP112_08085) cclA/cilC 1624161..1624805 (+) 645 WP_105134882.1 A24 family peptidase Machinery gene
  DP112_RS08090 (DP112_08090) - 1624913..1626373 (+) 1461 WP_024406672.1 nicotinate phosphoribosyltransferase -
  DP112_RS08095 (DP112_08095) nadE 1626386..1627210 (+) 825 WP_114866736.1 ammonia-dependent NAD(+) synthetase -
  DP112_RS08100 (DP112_08100) trpB 1627253..1628428 (-) 1176 WP_114866737.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24157.21 Da        Isoelectric Point: 8.4760

>NTDB_id=299495 DP112_RS08085 WP_105134882.1 1624161..1624805(+) (cclA/cilC) [Streptococcus suis strain HA1003]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEVLAG
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFTALILSQLNWLFCGFLLLAYLTEKWQVNIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=299495 DP112_RS08085 WP_105134882.1 1624161..1624805(+) (cclA/cilC) [Streptococcus suis strain HA1003]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCAATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGTAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACCTAATACCCATCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCCAAGATCCCTTATTGGTATCTGGGACTAGAAGTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTAGCAGGGCTAGTTTTGACCAT
TTATGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTACAGCTCTGATACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTAACTGAAAAATGGCAAGTCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAAATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.585

99.065

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

47.17

99.065

0.467
  cclA/cilC Streptococcus pneumoniae D39

47.17

99.065

0.467
  cclA/cilC Streptococcus pneumoniae R6

47.17

99.065

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

46.226

99.065

0.458
  cclA/cilC Streptococcus mitis NCTC 12261

44.811

99.065

0.444

Multiple sequence alignment