Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ETA19_RS09215 Genome accession   NZ_CP035401
Coordinates   1762818..1763249 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM103837     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1757818..1768249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA19_RS09195 (ETA19_09195) spoVS 1758379..1758639 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ETA19_RS09200 (ETA19_09200) tdh 1758905..1759948 (+) 1044 WP_128992852.1 L-threonine 3-dehydrogenase -
  ETA19_RS09205 (ETA19_09205) kbl 1759961..1761139 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  ETA19_RS09210 (ETA19_09210) miaB 1761287..1762816 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ETA19_RS09215 (ETA19_09215) ymcA 1762818..1763249 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ETA19_RS09220 (ETA19_09220) cotE 1763503..1764048 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  ETA19_RS09225 (ETA19_09225) hexA 1764181..1766757 (+) 2577 WP_033883742.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=299490 ETA19_RS09215 WP_003231834.1 1762818..1763249(+) (ymcA) [Bacillus subtilis strain SRCM103837]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=299490 ETA19_RS09215 WP_003231834.1 1762818..1763249(+) (ymcA) [Bacillus subtilis strain SRCM103837]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment