Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DP112_RS07465 Genome accession   NZ_CP030125
Coordinates   1482457..1483260 (-) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477457..1488260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS07450 (DP112_07450) recR 1478046..1478642 (-) 597 WP_002935848.1 recombination mediator RecR -
  DP112_RS07455 (DP112_07455) pbp2b 1478651..1480726 (-) 2076 WP_114866692.1 penicillin-binding protein PBP2B -
  DP112_RS07460 (DP112_07460) vga(F) 1480818..1482203 (-) 1386 WP_164503922.1 ABC-F type ribosomal protection protein Vga(F) -
  DP112_RS07465 (DP112_07465) vicX 1482457..1483260 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  DP112_RS07470 (DP112_07470) micB 1483267..1484616 (-) 1350 WP_114866693.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DP112_RS07475 (DP112_07475) micA 1484609..1485313 (-) 705 WP_004298854.1 response regulator YycF Regulator
  DP112_RS07480 (DP112_07480) - 1485507..1486268 (+) 762 WP_114866694.1 amino acid ABC transporter ATP-binding protein -
  DP112_RS07485 (DP112_07485) - 1486279..1487118 (+) 840 WP_114866695.1 transporter substrate-binding domain-containing protein -
  DP112_RS07490 (DP112_07490) - 1487133..1487831 (+) 699 WP_024410916.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=299490 DP112_RS07465 WP_002935843.1 1482457..1483260(-) (vicX) [Streptococcus suis strain HA1003]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=299490 DP112_RS07465 WP_002935843.1 1482457..1483260(-) (vicX) [Streptococcus suis strain HA1003]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGAATTCTATCCGATAAGGGCCATCTTTGTAATGAAGATGGAGCAGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGATACATCGCCAGATACAGCGACGCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment