Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ETA19_RS08200 Genome accession   NZ_CP035401
Coordinates   1556880..1557329 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM103837     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551880..1562329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA19_RS08160 (ETA19_08160) ctaE 1551896..1552519 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ETA19_RS08165 (ETA19_08165) ctaF 1552522..1552854 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ETA19_RS08170 (ETA19_08170) ctaG 1552882..1553775 (+) 894 WP_128992796.1 cytochrome c oxidase assembly factor CtaG -
  ETA19_RS08175 (ETA19_08175) ylbA 1553807..1554169 (-) 363 WP_003232238.1 YugN family protein -
  ETA19_RS08180 (ETA19_08180) ylbB 1554309..1554755 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ETA19_RS08185 (ETA19_08185) ylbC 1554839..1555879 (+) 1041 WP_015483195.1 CAP domain-containing protein -
  ETA19_RS08190 (ETA19_08190) ylbD 1556111..1556509 (+) 399 WP_128992798.1 YlbD family protein -
  ETA19_RS08195 (ETA19_08195) ylbE 1556525..1556764 (+) 240 WP_003232231.1 YlbE-like family protein -
  ETA19_RS08200 (ETA19_08200) ylbF 1556880..1557329 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ETA19_RS08205 (ETA19_08205) ylbG 1557384..1557656 (+) 273 WP_015715839.1 YlbG family protein -
  ETA19_RS08210 (ETA19_08210) rsmD 1557979..1558533 (+) 555 WP_128992800.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ETA19_RS08215 (ETA19_08215) coaD 1558538..1559023 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ETA19_RS08220 (ETA19_08220) spoVV 1559034..1560260 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  ETA19_RS08225 (ETA19_08225) ylbK 1560441..1561223 (+) 783 WP_021479345.1 patatin family protein -
  ETA19_RS08230 (ETA19_08230) sepM 1561225..1562250 (+) 1026 WP_128992802.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=299479 ETA19_RS08200 WP_003221370.1 1556880..1557329(+) (ylbF) [Bacillus subtilis strain SRCM103837]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=299479 ETA19_RS08200 WP_003221370.1 1556880..1557329(+) (ylbF) [Bacillus subtilis strain SRCM103837]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGGCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment