Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SHAL_RS03245 Genome accession   NC_010334
Coordinates   764872..765543 (+) Length   223 a.a.
NCBI ID   WP_012275762.1    Uniprot ID   B0TS73
Organism   Shewanella halifaxensis HAW-EB4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 759872..770543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHAL_RS03230 (Shal_0630) - 760042..760344 (-) 303 WP_049763867.1 hypothetical protein -
  SHAL_RS03235 (Shal_0631) uvrA 760362..763205 (-) 2844 WP_012275760.1 excinuclease ABC subunit UvrA -
  SHAL_RS03240 (Shal_0632) - 763472..764839 (+) 1368 WP_012275761.1 MFS transporter -
  SHAL_RS03245 (Shal_0633) ssb 764872..765543 (+) 672 WP_012275762.1 single-stranded DNA-binding protein Machinery gene
  SHAL_RS23600 (Shal_0634) - 765787..767454 (-) 1668 WP_012275763.1 sigma 54-interacting transcriptional regulator -
  SHAL_RS03255 (Shal_0635) ygeW 767916..769103 (+) 1188 WP_012275764.1 knotted carbamoyltransferase YgeW -
  SHAL_RS03260 (Shal_0636) dpaL 769189..770403 (+) 1215 WP_012275765.1 diaminopropionate ammonia-lyase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24428.74 Da        Isoelectric Point: 7.0115

>NTDB_id=29942 SHAL_RS03245 WP_012275762.1 764872..765543(+) (ssb) [Shewanella halifaxensis HAW-EB4]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVVDQSGSMQMLGSRNQNAGAPAQGGNSGYGQQPQQQQGGYAPKPQQAPQQQGGYAPKPQ
QAPAQQGGYQQQPQQQAPQQGGYAPKPQSAPAPQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 672 bp        

>NTDB_id=29942 SHAL_RS03245 WP_012275762.1 764872..765543(+) (ssb) [Shewanella halifaxensis HAW-EB4]
ATGGCTAGTCGTGGTGTCAATAAAGTAATTTTGGTCGGTAATTTAGGACAAGATCCTGAAGTACGTTATATGCCTAACGG
CAATGCCGTAGCCAATATTACCGTGGCGACAAGTGAGTCTTGGAAAGACCAACAAGGTCAGCAGCAAGAGCGTACTGAAT
GGCACCGTGTTGTGATGTTCGGCAAACTAGCTGAAATCACTGGTGAGTATTTACGTAAAGGCTCTCAAGTTTACCTTGAA
GGCAAGCTACAGACTCGTAAGTGGAAAGACCAAAGTGGTCAAGATCGTTACAGCACTGAAGTCGTTGTCGATCAAAGTGG
CAGCATGCAGATGCTGGGTAGCCGTAACCAAAATGCTGGTGCACCAGCACAAGGTGGTAACTCAGGTTATGGTCAGCAGC
CACAACAGCAACAAGGTGGTTATGCTCCTAAGCCGCAACAAGCTCCTCAGCAGCAGGGCGGCTATGCACCTAAGCCACAA
CAGGCTCCAGCTCAGCAAGGTGGTTACCAACAGCAACCACAGCAGCAAGCGCCTCAGCAAGGTGGTTATGCACCTAAGCC
ACAATCAGCTCCAGCTCCGCAGCAAGCGCCACAACAGCGCCCAGCTCCGCAGCCACAGCAGAACTTCACTCCAGATTTGG
ATGATGGCTGGGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0TS73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.444

100

0.57
  ssb Glaesserella parasuis strain SC1401

46.364

98.655

0.457
  ssb Neisseria meningitidis MC58

44.796

99.103

0.444
  ssb Neisseria gonorrhoeae MS11

44.796

99.103

0.444

Multiple sequence alignment