Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PPUTGB1_RS02635 Genome accession   NC_010322
Coordinates   588747..589292 (+) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida GB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 583747..594292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPUTGB1_RS02620 (PputGB1_0511) bfr 583842..584306 (+) 465 WP_003257116.1 bacterioferritin -
  PPUTGB1_RS02625 (PputGB1_0512) uvrA 584379..587213 (-) 2835 WP_012270240.1 excinuclease ABC subunit UvrA -
  PPUTGB1_RS02630 (PputGB1_0513) - 587343..588737 (+) 1395 WP_012270241.1 MFS transporter -
  PPUTGB1_RS02635 (PputGB1_0514) ssb 588747..589292 (+) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  PPUTGB1_RS02640 (PputGB1_0515) - 589425..590711 (+) 1287 WP_012270242.1 tyrosine-type recombinase/integrase -
  PPUTGB1_RS02645 (PputGB1_0516) - 590704..592269 (+) 1566 WP_012270243.1 site-specific integrase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=29919 PPUTGB1_RS02635 WP_003255446.1 588747..589292(+) (ssb) [Pseudomonas putida GB-1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=29919 PPUTGB1_RS02635 WP_003255446.1 588747..589292(+) (ssb) [Pseudomonas putida GB-1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGTTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGTCGTCCGCAGGGTCAGCAGCAGGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACGGTG
GCGGTCAACAGCAGCAGTACAACCAGGCCCCGCCTCGTCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCACAGCAGCCAGCTCCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492

Multiple sequence alignment