Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DPM16_RS07310 Genome accession   NZ_CP030086
Coordinates   1453151..1453606 (-) Length   151 a.a.
NCBI ID   WP_112205419.1    Uniprot ID   A0A2Z4JPG1
Organism   Polynucleobacter paneuropaeus strain MWH-Creno-4B4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1448151..1458606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPM16_RS07295 (DPM16_07295) ilvA 1449882..1451402 (+) 1521 WP_112318475.1 threonine ammonia-lyase, biosynthetic -
  DPM16_RS07300 (DPM16_07300) - 1451404..1452312 (+) 909 WP_112314244.1 5'-nucleotidase -
  DPM16_RS07305 (DPM16_07305) queF 1452317..1453144 (+) 828 WP_112205417.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  DPM16_RS07310 (DPM16_07310) ssb 1453151..1453606 (-) 456 WP_112205419.1 single-stranded DNA-binding protein Machinery gene
  DPM16_RS07315 (DPM16_07315) - 1453671..1454837 (-) 1167 WP_112205420.1 MFS transporter -
  DPM16_RS07320 (DPM16_07320) uvrA 1454874..1457759 (+) 2886 WP_112318476.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16269.09 Da        Isoelectric Point: 5.9444

>NTDB_id=299030 DPM16_RS07310 WP_112205419.1 1453151..1453606(-) (ssb) [Polynucleobacter paneuropaeus strain MWH-Creno-4B4]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVSETMQMLGGKPVGGSEGGESYSRSKSAESSAPAASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=299030 DPM16_RS07310 WP_112205419.1 1453151..1453606(-) (ssb) [Polynucleobacter paneuropaeus strain MWH-Creno-4B4]
ATGGCTTCGGTAAATAAAGTCATCATTGTGGGTAATGTAGGACGTGACCCAGAAACGCGTTATATGCCTAGTGGCGACGC
AGTAACCAATATCTCAGTAGCGACTTCAGATCGTTACAAAGACAAGCAAACTGGTGAAATGAAAGAGACCACTGAATGGC
ATCGTGTTGCATTCTTTGGCAAGCTTGCAGAGATTGCAGGCCAGTATTTGAAAAAAGGTTCACAAGTCTATGTTGAGGGT
CGCTTACGCACTCGCAAGTGGACTGATGCGAGTGGTCAAGAAAAATACTCTACAGAGATCGTTTCTGAAACCATGCAAAT
GTTGGGTGGTAAGCCAGTAGGTGGTAGCGAAGGTGGCGAGAGCTACAGTCGCTCGAAGTCTGCTGAATCATCTGCACCAG
CAGCGTCCTCTAATGCTGCTTCCTTAGGCGCAATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4JPG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.124

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.556
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.517
  ssb Neisseria meningitidis MC58

44.828

100

0.517

Multiple sequence alignment