Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ES965_RS13930 Genome accession   NZ_CP035391
Coordinates   2661006..2661701 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain SRCM103689     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2656006..2666701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS13905 (ES965_13905) minD 2656942..2657748 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  ES965_RS13910 (ES965_13910) minC 2657750..2658430 (-) 681 WP_029318187.1 septum site-determining protein MinC -
  ES965_RS13915 (ES965_13915) mreD 2658483..2659001 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ES965_RS13920 (ES965_13920) mreC 2658998..2659870 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ES965_RS13925 (ES965_13925) mreB 2659901..2660914 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ES965_RS13930 (ES965_13930) ysxA/radC 2661006..2661701 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  ES965_RS13935 (ES965_13935) maf 2661738..2662307 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  ES965_RS13940 (ES965_13940) spoIIB 2662460..2663458 (-) 999 WP_086344157.1 stage II sporulation protein SpoIIB -
  ES965_RS13945 (ES965_13945) comC 2663592..2664338 (-) 747 WP_080474433.1 A24 family peptidase Machinery gene
  ES965_RS13950 (ES965_13950) folC 2664479..2665771 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=298768 ES965_RS13930 WP_003246034.1 2661006..2661701(-) (ysxA/radC) [Bacillus subtilis strain SRCM103689]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=298768 ES965_RS13930 WP_003246034.1 2661006..2661701(-) (ysxA/radC) [Bacillus subtilis strain SRCM103689]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACAGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment