Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DOM21_RS16655 | Genome accession | NZ_CP030035 |
| Coordinates | 3330728..3331198 (-) | Length | 156 a.a. |
| NCBI ID | WP_102242302.1 | Uniprot ID | A0A2K9NNC1 |
| Organism | Bacteriovorax stolpii strain AC01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3325728..3336198
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DOM21_RS16635 (DOM21_16675) | - | 3326581..3327552 (+) | 972 | WP_142410119.1 | thioesterase domain-containing protein | - |
| DOM21_RS16640 (DOM21_16680) | - | 3327580..3329643 (+) | 2064 | WP_142410120.1 | DUF748 domain-containing protein | - |
| DOM21_RS16645 (DOM21_16685) | - | 3329640..3329996 (-) | 357 | WP_142410121.1 | hypothetical protein | - |
| DOM21_RS16650 (DOM21_16690) | - | 3330203..3330673 (+) | 471 | WP_185903057.1 | HPP family protein | - |
| DOM21_RS16655 (DOM21_16695) | ssb | 3330728..3331198 (-) | 471 | WP_102242302.1 | single-stranded DNA-binding protein | Machinery gene |
| DOM21_RS16660 (DOM21_16700) | - | 3331336..3331740 (-) | 405 | WP_142410123.1 | hypothetical protein | - |
| DOM21_RS16665 (DOM21_16705) | - | 3332102..3334765 (+) | 2664 | WP_142410124.1 | Tad domain-containing protein | - |
| DOM21_RS16670 (DOM21_16710) | - | 3334847..3335605 (+) | 759 | WP_142410125.1 | hypothetical protein | - |
| DOM21_RS16675 (DOM21_16715) | - | 3335664..3335924 (+) | 261 | WP_102242298.1 | glutaredoxin | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17088.98 Da Isoelectric Point: 5.2044
>NTDB_id=298621 DOM21_RS16655 WP_102242302.1 3330728..3331198(-) (ssb) [Bacteriovorax stolpii strain AC01]
MSMSVNKVIILGRLGQDPELKYTPGGMAVCNFTLATSESWADKAGQKQERTEWHRIVVWGKLAELCNQYLTKGRQAYVEG
SLQTRSWDDKSGQKRYTTEINAKTIQFIGGATAGAGANAGAGKDMNQSGPSYDSSMVNQDYDISTDTNFTSDDIPF
MSMSVNKVIILGRLGQDPELKYTPGGMAVCNFTLATSESWADKAGQKQERTEWHRIVVWGKLAELCNQYLTKGRQAYVEG
SLQTRSWDDKSGQKRYTTEINAKTIQFIGGATAGAGANAGAGKDMNQSGPSYDSSMVNQDYDISTDTNFTSDDIPF
Nucleotide
Download Length: 471 bp
>NTDB_id=298621 DOM21_RS16655 WP_102242302.1 3330728..3331198(-) (ssb) [Bacteriovorax stolpii strain AC01]
ATCTCAATGAGTGTTAACAAAGTAATTATCCTTGGACGTCTAGGACAAGACCCAGAGTTGAAATACACTCCAGGTGGAAT
GGCAGTTTGTAACTTCACACTAGCGACAAGCGAATCATGGGCAGACAAAGCAGGACAAAAACAAGAAAGAACTGAATGGC
ATAGAATTGTTGTTTGGGGAAAACTTGCTGAGCTTTGCAACCAATACCTAACAAAAGGAAGACAAGCGTACGTTGAAGGA
TCACTTCAAACTCGTTCATGGGACGATAAGAGCGGCCAAAAACGTTACACAACAGAAATCAACGCTAAGACTATTCAGTT
CATCGGTGGAGCAACTGCTGGTGCTGGTGCAAATGCTGGAGCAGGTAAAGATATGAACCAAAGCGGTCCATCTTACGACT
CAAGCATGGTTAACCAAGATTACGACATTTCGACAGACACAAACTTCACATCTGACGACATTCCGTTTTAG
ATCTCAATGAGTGTTAACAAAGTAATTATCCTTGGACGTCTAGGACAAGACCCAGAGTTGAAATACACTCCAGGTGGAAT
GGCAGTTTGTAACTTCACACTAGCGACAAGCGAATCATGGGCAGACAAAGCAGGACAAAAACAAGAAAGAACTGAATGGC
ATAGAATTGTTGTTTGGGGAAAACTTGCTGAGCTTTGCAACCAATACCTAACAAAAGGAAGACAAGCGTACGTTGAAGGA
TCACTTCAAACTCGTTCATGGGACGATAAGAGCGGCCAAAAACGTTACACAACAGAAATCAACGCTAAGACTATTCAGTT
CATCGGTGGAGCAACTGCTGGTGCTGGTGCAAATGCTGGAGCAGGTAAAGATATGAACCAAAGCGGTCCATCTTACGACT
CAAGCATGGTTAACCAAGATTACGACATTTCGACAGACACAAACTTCACATCTGACGACATTCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
43.478 |
100 |
0.513 |
| ssb | Glaesserella parasuis strain SC1401 |
51.24 |
77.564 |
0.397 |
| ssb | Neisseria meningitidis MC58 |
50.877 |
73.077 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
50.877 |
73.077 |
0.372 |