Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DOM24_RS13525 | Genome accession | NZ_CP030031 |
| Coordinates | 2866991..2867575 (-) | Length | 194 a.a. |
| NCBI ID | WP_005017910.1 | Uniprot ID | A0A062C4D5 |
| Organism | Acinetobacter radioresistens strain LH6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2861991..2872575
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DOM24_RS13505 (DOM24_13505) | katE | 2862216..2864339 (+) | 2124 | WP_111282558.1 | catalase HPII | - |
| DOM24_RS13510 (DOM24_13510) | - | 2864653..2865300 (+) | 648 | WP_111282560.1 | hypothetical protein | - |
| DOM24_RS13515 (DOM24_13515) | - | 2865577..2865903 (+) | 327 | WP_005024124.1 | hypothetical protein | - |
| DOM24_RS13520 (DOM24_13520) | - | 2865979..2866845 (+) | 867 | WP_034684798.1 | SDR family oxidoreductase | - |
| DOM24_RS13525 (DOM24_13525) | ssb | 2866991..2867575 (-) | 585 | WP_005017910.1 | single-stranded DNA-binding protein | Machinery gene |
| DOM24_RS13530 (DOM24_13530) | - | 2867627..2868991 (-) | 1365 | WP_005017908.1 | MFS transporter | - |
| DOM24_RS13540 (DOM24_13540) | - | 2869140..2870222 (-) | 1083 | WP_005024117.1 | DUF475 domain-containing protein | - |
| DOM24_RS13545 (DOM24_13545) | tenA | 2870463..2871137 (+) | 675 | WP_111282562.1 | thiaminase II | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21073.77 Da Isoelectric Point: 6.4820
>NTDB_id=298593 DOM24_RS13525 WP_005017910.1 2866991..2867575(-) (ssb) [Acinetobacter radioresistens strain LH6]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGDQAGAGFGGDQGYGQPRFNNNQGSQGGYGNGNQQGSGFNNNSNQG
GGYGNNNPGGFAPKAPQSAPASQVPADLDDDLPF
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGDQAGAGFGGDQGYGQPRFNNNQGSQGGYGNGNQQGSGFNNNSNQG
GGYGNNNPGGFAPKAPQSAPASQVPADLDDDLPF
Nucleotide
Download Length: 585 bp
>NTDB_id=298593 DOM24_RS13525 WP_005017910.1 2866991..2867575(-) (ssb) [Acinetobacter radioresistens strain LH6]
ATGCGTGGTGTAAATAAGGTTATTTTAGTAGGGACTTTAGGGCGCGATCCAGAGACAAAAACTTTCCCAAATGGCGGCTC
TTTAACACAGTTTTCTATCGCAACGAGTGAATCGTGGACAGATAAAAGCACAGGTGAACGTAAAGAACAGACAGAATGGC
ACCGTATTGTGCTACACAACCGTCTAGGTGAAATTGCCCAGCAATATTTACGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCATTGCGTACCCGTCAATGGACCGACCAGAACGGTCAGGAACGTTATACTACCGAGATTCGTGGTGAACAGATGCAGAT
GCTAGACTCAGGCCGACAGCAGGGCGATCAGGCAGGTGCAGGTTTTGGTGGTGATCAAGGCTATGGTCAACCACGTTTTA
ACAATAATCAGGGTAGCCAGGGCGGTTATGGTAACGGCAACCAGCAGGGTAGCGGTTTTAATAATAACAGCAACCAAGGT
GGCGGTTATGGCAATAATAACCCGGGCGGTTTCGCACCTAAAGCTCCTCAGTCAGCTCCAGCCTCTCAAGTTCCGGCTGA
CCTGGATGATGATCTGCCATTCTAA
ATGCGTGGTGTAAATAAGGTTATTTTAGTAGGGACTTTAGGGCGCGATCCAGAGACAAAAACTTTCCCAAATGGCGGCTC
TTTAACACAGTTTTCTATCGCAACGAGTGAATCGTGGACAGATAAAAGCACAGGTGAACGTAAAGAACAGACAGAATGGC
ACCGTATTGTGCTACACAACCGTCTAGGTGAAATTGCCCAGCAATATTTACGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCATTGCGTACCCGTCAATGGACCGACCAGAACGGTCAGGAACGTTATACTACCGAGATTCGTGGTGAACAGATGCAGAT
GCTAGACTCAGGCCGACAGCAGGGCGATCAGGCAGGTGCAGGTTTTGGTGGTGATCAAGGCTATGGTCAACCACGTTTTA
ACAATAATCAGGGTAGCCAGGGCGGTTATGGTAACGGCAACCAGCAGGGTAGCGGTTTTAATAATAACAGCAACCAAGGT
GGCGGTTATGGCAATAATAACCCGGGCGGTTTCGCACCTAAAGCTCCTCAGTCAGCTCCAGCCTCTCAAGTTCCGGCTGA
CCTGGATGATGATCTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
51.471 |
100 |
0.541 |
| ssb | Vibrio cholerae strain A1552 |
44.39 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
41 |
100 |
0.423 |
| ssb | Neisseria meningitidis MC58 |
40.5 |
100 |
0.418 |