Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C0W45_RS00040 | Genome accession | NZ_CP029966 |
| Coordinates | 9602..10114 (+) | Length | 170 a.a. |
| NCBI ID | WP_004265848.1 | Uniprot ID | A0A0B2XPH3 |
| Organism | Latilactobacillus curvatus strain ZJUNIT8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4602..15114
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0W45_RS00030 (C0W45_00030) | gyrA | 6438..9023 (+) | 2586 | WP_111447305.1 | DNA gyrase subunit A | - |
| C0W45_RS00035 (C0W45_00035) | rpsF | 9266..9562 (+) | 297 | WP_004265809.1 | 30S ribosomal protein S6 | - |
| C0W45_RS00040 (C0W45_00040) | ssb | 9602..10114 (+) | 513 | WP_004265848.1 | single-stranded DNA-binding protein | Machinery gene |
| C0W45_RS00045 (C0W45_00045) | rpsR | 10145..10384 (+) | 240 | WP_004265822.1 | 30S ribosomal protein S18 | - |
| C0W45_RS00050 (C0W45_00050) | - | 10601..12631 (+) | 2031 | WP_004265804.1 | DHH family phosphoesterase | - |
| C0W45_RS00055 (C0W45_00055) | rplI | 12653..13105 (+) | 453 | WP_004265788.1 | 50S ribosomal protein L9 | - |
| C0W45_RS00060 (C0W45_00060) | dnaB | 13250..14653 (+) | 1404 | WP_172821848.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18621.16 Da Isoelectric Point: 4.6856
>NTDB_id=297950 C0W45_RS00040 WP_004265848.1 9602..10114(+) (ssb) [Latilactobacillus curvatus strain ZJUNIT8]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=297950 C0W45_RS00040 WP_004265848.1 9602..10114(+) (ssb) [Latilactobacillus curvatus strain ZJUNIT8]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
97.059 |
100 |
0.971 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56 |
100 |
0.576 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
62.353 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
33.155 |
100 |
0.365 |