Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BPET_RS24815 Genome accession   NC_010170
Coordinates   5173307..5173816 (-) Length   169 a.a.
NCBI ID   WP_012251727.1    Uniprot ID   -
Organism   Bordetella petrii     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5168307..5178816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPET_RS24790 (Bpet4900) - 5169260..5169832 (+) 573 WP_012251722.1 RNA polymerase sigma factor -
  BPET_RS24795 (Bpet4901) - 5169829..5170587 (+) 759 WP_012251723.1 anti-sigma factor -
  BPET_RS24800 (Bpet4902) - 5170638..5171540 (+) 903 WP_012251724.1 DMT family transporter -
  BPET_RS24805 (Bpet4903) - 5171646..5172452 (+) 807 WP_012251725.1 SDR family oxidoreductase -
  BPET_RS24810 (Bpet4904) - 5172510..5173214 (+) 705 WP_012251726.1 haloacid dehalogenase type II -
  BPET_RS24815 (Bpet4905) ssb 5173307..5173816 (-) 510 WP_012251727.1 single-stranded DNA-binding protein Machinery gene
  BPET_RS24820 (Bpet4906) - 5174081..5175262 (-) 1182 WP_012251729.1 MFS transporter -
  BPET_RS24825 (Bpet4907) uvrA 5175351..5178209 (+) 2859 WP_041863303.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18214.24 Da        Isoelectric Point: 5.9702

>NTDB_id=29747 BPET_RS24815 WP_012251727.1 5173307..5173816(-) (ssb) [Bordetella petrii]
MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKATGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDSGGEGGYGGGGGYDEAPRQQRAAAQRPPAQRPAPAAAAPAAGGAANL
ADMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=29747 BPET_RS24815 WP_012251727.1 5173307..5173816(-) (ssb) [Bordetella petrii]
ATGGCATCGGTCAATAAAGTCATTCTCGTCGGCAACCTGGGACGCGATCCCGAAGTCCGCTACAGCCCCGATGGCGCGGC
GATCTGCAATGTTTCCATTGCCACCACCTCGCAATGGAAAGACAAGGCCACCGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTGTACATCGAGGGC
CGCCTGAAGACCCGCAAGTGGCAAGACAAAGACACCGGCGCCGACCGCTACAGCACCGAAATCGTTGCCGACCAGATGCA
GATGCTGGGCGGCCGCGATAGCGGCGGCGAAGGCGGCTACGGTGGCGGCGGCGGCTACGATGAAGCGCCGCGCCAGCAGC
GCGCTGCGGCCCAGCGTCCGCCCGCGCAACGTCCGGCTCCGGCCGCCGCCGCGCCGGCCGCGGGCGGCGCCGCCAACCTG
GCGGACATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.591

100

0.574
  ssb Neisseria gonorrhoeae MS11

52.778

100

0.562
  ssb Glaesserella parasuis strain SC1401

50

100

0.556
  ssb Neisseria meningitidis MC58

50

100

0.533

Multiple sequence alignment