Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SUB_RS08850 Genome accession   NC_012004
Coordinates   1767353..1767946 (-) Length   197 a.a.
NCBI ID   WP_015912071.1    Uniprot ID   B9DW68
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1762353..1772946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS08815 (SUB1774) - 1762380..1762685 (-) 306 WP_015912065.1 DUF1292 domain-containing protein -
  SUB_RS08820 (SUB1775) ruvX 1762696..1763115 (-) 420 WP_015912066.1 Holliday junction resolvase RuvX -
  SUB_RS08825 (SUB1776) - 1763112..1763381 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  SUB_RS08830 (SUB1777) spx 1763497..1763895 (-) 399 WP_015912067.1 transcriptional regulator Spx -
  SUB_RS08835 (SUB1778) recA 1764211..1765350 (-) 1140 WP_015912068.1 recombinase RecA Machinery gene
  SUB_RS08840 (SUB1779) cinA 1765432..1766703 (-) 1272 WP_015912069.1 competence/damage-inducible protein A Machinery gene
  SUB_RS08845 (SUB1780) - 1766794..1767348 (-) 555 WP_015912070.1 DNA-3-methyladenine glycosylase I -
  SUB_RS08850 (SUB1781) ruvA 1767353..1767946 (-) 594 WP_015912071.1 Holliday junction branch migration protein RuvA Machinery gene
  SUB_RS08855 (SUB1782) - 1767948..1769171 (-) 1224 WP_015912072.1 MDR family MFS transporter -
  SUB_RS08860 (SUB1783) hexB 1769181..1771163 (-) 1983 WP_015912073.1 DNA mismatch repair endonuclease MutL Machinery gene
  SUB_RS08865 (SUB1784) - 1771381..1771890 (+) 510 WP_015912074.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21789.30 Da        Isoelectric Point: 6.2490

>NTDB_id=29720 SUB_RS08850 WP_015912071.1 1767353..1767946(-) (ruvA) [Streptococcus uberis 0140J]
MFDYIKGQLTKITAKYIVVEANGLGYIIYVANPYSFSDSVNQTLTIYLHQVIREDAHLLFGFHTENEKDVFLKLISVSGI
GPMTALAIVAVDDNEGLVAAIDNSDIKYLMKFPKIGKKTAQQMILDLSGKFVTIPEGGQAQQMPKAKGNQQLDEAIEALL
ALGYKATELKKIRAFFEGTDDTAEQYIKSALKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=29720 SUB_RS08850 WP_015912071.1 1767353..1767946(-) (ruvA) [Streptococcus uberis 0140J]
ATGTTTGATTATATCAAAGGTCAATTAACAAAAATTACAGCAAAATATATCGTCGTTGAAGCAAACGGATTAGGCTATAT
TATTTATGTCGCTAATCCCTATAGTTTCTCGGATAGTGTCAATCAGACGCTTACAATCTACCTTCATCAAGTTATTCGTG
AAGACGCACATCTCCTTTTTGGGTTTCACACAGAAAATGAAAAAGATGTTTTTCTAAAGTTGATTTCAGTTTCAGGAATT
GGTCCAATGACTGCCTTAGCAATTGTTGCAGTTGATGACAACGAAGGATTAGTGGCAGCAATCGATAATAGCGATATCAA
ATATTTAATGAAATTTCCGAAAATTGGAAAGAAAACCGCACAACAAATGATATTGGATTTATCAGGTAAATTTGTAACCA
TTCCTGAAGGCGGACAAGCTCAGCAAATGCCAAAAGCCAAGGGTAACCAACAACTTGACGAGGCAATCGAAGCCCTTTTA
GCATTAGGATATAAAGCAACCGAGCTTAAAAAAATCCGTGCCTTTTTTGAAGGAACAGATGATACCGCAGAGCAATACAT
CAAATCGGCTCTTAAGATGCTTATGAAAGGCTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DW68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.675
  ruvA Streptococcus pneumoniae D39

67.513

100

0.675
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.67
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426

Multiple sequence alignment