Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EQH24_RS05325 Genome accession   NZ_CP035256
Coordinates   1035956..1036636 (+) Length   226 a.a.
NCBI ID   WP_023396259.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901930     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1030956..1041636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH24_RS05310 (EQH24_05610) - 1031387..1032247 (+) 861 WP_000631543.1 methionyl aminopeptidase -
  EQH24_RS05315 (EQH24_05620) - 1032626..1033431 (+) 806 Protein_1066 IS5 family transposase -
  EQH24_RS05320 (EQH24_05625) pcrA 1033622..1035913 (+) 2292 WP_000992881.1 DNA helicase PcrA -
  EQH24_RS05325 (EQH24_05630) radC 1035956..1036636 (+) 681 WP_023396259.1 RadC family protein Machinery gene
  EQH24_RS05330 (EQH24_05635) - 1036633..1037322 (-) 690 WP_000743330.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  EQH24_RS05335 (EQH24_05640) - 1037340..1037981 (-) 642 WP_000653403.1 redox-sensing transcriptional repressor Rex -
  EQH24_RS05340 (EQH24_05645) - 1038064..1038279 (-) 216 WP_023396260.1 DUF4649 family protein -
  EQH24_RS05345 (EQH24_05650) - 1038287..1038634 (-) 348 WP_000863509.1 DUF1831 domain-containing protein -
  EQH24_RS05350 (EQH24_05655) - 1038639..1039754 (-) 1116 WP_023396261.1 cysteine desulfurase family protein -
  EQH24_RS05355 (EQH24_05660) - 1039764..1040723 (-) 960 WP_001283813.1 ribose-phosphate diphosphokinase -
  EQH24_RS05360 (EQH24_05665) - 1040836..1041405 (-) 570 WP_000681293.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25505.45 Da        Isoelectric Point: 7.1203

>NTDB_id=296950 EQH24_RS05325 WP_023396259.1 1035956..1036636(+) (radC) [Streptococcus pneumoniae strain TVO_1901930]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLETESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=296950 EQH24_RS05325 WP_023396259.1 1035956..1036636(+) (radC) [Streptococcus pneumoniae strain TVO_1901930]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGCTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAACGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGTTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTTCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAATTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radC Streptococcus pneumoniae R6

99.115

100

0.991
  radC Streptococcus pneumoniae D39

99.115

100

0.991
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447