Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SUB_RS06915 Genome accession   NC_012004
Coordinates   1372548..1373222 (-) Length   224 a.a.
NCBI ID   WP_015911696.1    Uniprot ID   B9DV33
Organism   Streptococcus uberis 0140J     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1367548..1378222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS06910 (SUB1375) hpf 1371924..1372472 (-) 549 WP_015911695.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SUB_RS06915 (SUB1376) comFC/cflB 1372548..1373222 (-) 675 WP_015911696.1 ComF family protein Machinery gene
  SUB_RS06920 (SUB1377) comFA/cflA 1373212..1374513 (-) 1302 WP_015911697.1 DEAD/DEAH box helicase Machinery gene
  SUB_RS06925 (SUB1378) - 1374570..1375199 (+) 630 WP_015911698.1 YigZ family protein -
  SUB_RS06930 (SUB1379) cysK 1375308..1376240 (+) 933 WP_015911699.1 cysteine synthase A -
  SUB_RS06935 (SUB1380) - 1376255..1376611 (-) 357 WP_015911700.1 S1 RNA-binding domain-containing protein -
  SUB_RS06940 (SUB1381) - 1376611..1378011 (-) 1401 WP_037593423.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26573.81 Da        Isoelectric Point: 8.7124

>NTDB_id=29694 SUB_RS06915 WP_015911696.1 1372548..1373222(-) (comFC/cflB) [Streptococcus uberis 0140J]
MDNSCLICNQWIEQELSLLEILCFQQKEFLLCKDCEWALQPIKSQFCPRCYKVGEESICHDCLKWSEKGYQVNHRALYVY
NGKMKDYFAKYKFQGDYILKSVFSKKIAKIIKNDYKGYVLVPVPISQKRYYERGYNQVEEILKSEKLTYTDLVLKREGKR
HSHLNKREREQSENPFYLNKIEKTIPENILIVDDIYTTGSTIYHIYSLLEKAGCQKIKSISIAR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=29694 SUB_RS06915 WP_015911696.1 1372548..1373222(-) (comFC/cflB) [Streptococcus uberis 0140J]
ATGGACAATAGCTGTCTTATTTGTAACCAATGGATAGAACAAGAACTAAGTCTTTTGGAAATCTTATGTTTTCAACAAAA
GGAATTCTTACTTTGTAAGGATTGTGAATGGGCACTACAACCAATCAAATCACAATTTTGTCCAAGATGCTATAAAGTTG
GTGAAGAATCAATTTGTCATGATTGTCTAAAATGGTCTGAAAAAGGTTACCAAGTAAACCATAGAGCTTTGTATGTTTAT
AATGGCAAAATGAAAGACTATTTCGCAAAATACAAGTTTCAAGGTGATTATATCTTGAAGTCAGTCTTTTCCAAAAAAAT
AGCTAAAATAATCAAGAATGACTATAAAGGTTATGTACTTGTTCCAGTTCCAATTAGTCAAAAGAGATACTATGAAAGAG
GGTATAATCAGGTAGAGGAAATCTTAAAGTCTGAAAAACTTACTTACACCGATCTTGTATTAAAAAGAGAAGGGAAAAGA
CACTCACACCTCAATAAACGTGAAAGAGAACAAAGCGAAAATCCCTTCTACTTAAATAAAATTGAGAAAACCATTCCAGA
AAACATTTTAATTGTTGACGATATCTATACTACAGGTAGTACGATATATCATATTTATTCCTTATTAGAAAAAGCTGGTT
GTCAAAAGATAAAAAGCATCAGTATAGCACGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DV33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

40.455

98.214

0.397
  comFC/cflB Streptococcus pneumoniae Rx1

40.455

98.214

0.397
  comFC/cflB Streptococcus pneumoniae D39

40.455

98.214

0.397
  comFC/cflB Streptococcus pneumoniae R6

40.455

98.214

0.397
  comFC/cflB Streptococcus mitis NCTC 12261

40

98.214

0.393
  comFC/cflB Streptococcus mitis SK321

39.545

98.214

0.388

Multiple sequence alignment