Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GDI_RS11090 Genome accession   NC_010125
Coordinates   2387484..2388038 (+) Length   184 a.a.
NCBI ID   WP_041249405.1    Uniprot ID   -
Organism   Gluconacetobacter diazotrophicus PA1 5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2382484..2393038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDI_RS11075 (GDI2319) speE 2382669..2383538 (-) 870 WP_012226211.1 polyamine aminopropyltransferase -
  GDI_RS11080 (GDI2320) speD 2383660..2384118 (-) 459 WP_012553186.1 adenosylmethionine decarboxylase -
  GDI_RS11085 (GDI2321) uvrA 2384277..2387189 (-) 2913 WP_041249404.1 excinuclease ABC subunit UvrA -
  GDI_RS11090 (GDI2322) ssb 2387484..2388038 (+) 555 WP_041249405.1 single-stranded DNA-binding protein Machinery gene
  GDI_RS11095 (GDI2323) gyrA 2388206..2390998 (+) 2793 WP_012226218.1 DNA gyrase subunit A -
  GDI_RS11100 (GDI2324) coaD 2390991..2391500 (+) 510 WP_012226220.1 pantetheine-phosphate adenylyltransferase -
  GDI_RS11105 (GDI2325) - 2391559..2392044 (+) 486 WP_012226222.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19302.09 Da        Isoelectric Point: 5.8317

>NTDB_id=29679 GDI_RS11090 WP_041249405.1 2387484..2388038(+) (ssb) [Gluconacetobacter diazotrophicus PA1 5]
MAGSVNKVILVGNLGKDPEVRNSQAGAKIVSLTLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGTLQTRKWTDQSGQERYTTEVVIDRFRGELVLLDSNRGGESGDDAGGGGYGGGYSAPSAPRQIGGGRGGSAGGPGGSGA
GGGNPGGGWDAPHGGSDLDDEIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=29679 GDI_RS11090 WP_041249405.1 2387484..2388038(+) (ssb) [Gluconacetobacter diazotrophicus PA1 5]
ATGGCGGGTAGCGTCAACAAGGTCATTCTCGTGGGTAATCTGGGCAAGGACCCCGAAGTCAGGAACAGCCAGGCCGGCGC
CAAGATCGTGTCGCTGACGCTGGCGACCAGCGACACGTGGAATGACCGTGCGTCCGGCGAACGGCGCGAGCGCACGGAAT
GGCATCGGGTCGTCATCTTCAACGAACGCCTGGCGGACGTGGCCGAGCGGTTCCTGCGCAAGGGCCGCAAGGTCTATCTG
GAAGGCACGCTGCAGACCCGCAAATGGACCGACCAGTCCGGCCAGGAACGCTACACGACCGAGGTCGTGATAGACCGCTT
CCGTGGCGAACTGGTGCTGCTGGACAGCAACCGGGGCGGCGAATCCGGTGACGATGCCGGCGGCGGCGGATATGGCGGCG
GGTATTCCGCGCCGTCCGCGCCCCGGCAGATCGGCGGTGGCCGCGGCGGCAGCGCCGGGGGTCCCGGCGGGAGCGGCGCG
GGCGGCGGCAATCCCGGCGGCGGCTGGGACGCACCGCATGGCGGCAGCGACCTGGACGACGAAATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.907

100

0.495
  ssb Vibrio cholerae strain A1552

44.022

100

0.44
  ssb Neisseria gonorrhoeae MS11

38.378

100

0.386
  ssb Neisseria meningitidis MC58

37.5

100

0.375

Multiple sequence alignment