Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EQH29_RS05040 Genome accession   NZ_CP035251
Coordinates   999886..1000566 (+) Length   226 a.a.
NCBI ID   WP_000286929.1    Uniprot ID   C1CE75
Organism   Streptococcus pneumoniae strain TVO_1901935     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 994886..1005566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH29_RS05020 (EQH29_05335) - 995335..996195 (+) 861 WP_047475122.1 methionyl aminopeptidase -
  EQH29_RS10635 (EQH29_05345) - 996576..997361 (+) 786 Protein_1004 IS5 family transposase -
  EQH29_RS05035 (EQH29_05350) pcrA 997552..999843 (+) 2292 WP_000992885.1 DNA helicase PcrA -
  EQH29_RS05040 (EQH29_05355) radC 999886..1000566 (+) 681 WP_000286929.1 RadC family protein Machinery gene
  EQH29_RS05045 (EQH29_05360) - 1000563..1001252 (-) 690 WP_000743318.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  EQH29_RS05050 (EQH29_05365) - 1001270..1001911 (-) 642 WP_000653403.1 redox-sensing transcriptional repressor Rex -
  EQH29_RS05055 (EQH29_05370) - 1001994..1002209 (-) 216 WP_000462487.1 DUF4649 family protein -
  EQH29_RS05060 (EQH29_05375) - 1002217..1002564 (-) 348 WP_000863509.1 DUF1831 domain-containing protein -
  EQH29_RS05065 (EQH29_05380) - 1002569..1003684 (-) 1116 WP_000639664.1 cysteine desulfurase family protein -
  EQH29_RS05070 (EQH29_05385) - 1003694..1004653 (-) 960 WP_001283813.1 ribose-phosphate diphosphokinase -
  EQH29_RS05075 (EQH29_05390) - 1004766..1005335 (-) 570 WP_000681287.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25563.59 Da        Isoelectric Point: 7.1203

>NTDB_id=296580 EQH29_RS05040 WP_000286929.1 999886..1000566(+) (radC) [Streptococcus pneumoniae strain TVO_1901935]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQVSVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=296580 EQH29_RS05040 WP_000286929.1 999886..1000566(+) (radC) [Streptococcus pneumoniae strain TVO_1901935]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGTTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGGTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTTCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAATTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CE75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radC Streptococcus pneumoniae R6

99.115

100

0.991
  radC Streptococcus pneumoniae D39

99.115

100

0.991
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447