Detailed information NTG0296309

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: EQH32_RS01255
• Genome accession: NZ_CP035248
• Coordinates: 227849..228847 (+)
• Length: 332 a.a.
• NCBI ID: WP_025169218.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain TVO_1901939
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 222849..233847

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH32_RS01235 (EQH32_01310)	leuS	222990..225491 (+)	2502	WP_000011756.1	leucine--tRNA ligase	-
EQH32_RS01240 (EQH32_01315)	-	225685..226380 (+)	696	WP_001144913.1	GNAT family N-acetyltransferase	-
EQH32_RS01245 (EQH32_01320)	-	226392..226808 (+)	417	WP_000628392.1	GNAT family N-acetyltransferase	-
EQH32_RS01250 (EQH32_01325)	-	227623..227715 (-)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
EQH32_RS01255 (EQH32_01330)	ruvB	227849..228847 (+)	999	WP_025169218.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
EQH32_RS01260 (EQH32_01335)	-	228828..229400 (+)	573	WP_025169219.1	nucleotidyltransferase family protein	-
EQH32_RS01265 (EQH32_01340)	-	229631..230389 (+)	759	WP_000467312.1	isoprenyl transferase	-
EQH32_RS01270 (EQH32_01345)	-	230398..231201 (+)	804	WP_000189857.1	phosphatidate cytidylyltransferase	-
EQH32_RS01275 (EQH32_01350)	eeP	231223..232482 (+)	1260	WP_000900660.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37321.79 Da
• Isoelectric Point: 4.5053

>NTDB_id=296309 EQH32_RS01255 WP_025169218.1 227849..228847(+) (ruvB) [Streptococcus pneumoniae strain TVO_1901939]
MSRILDNEMMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DVITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRMATAK
AYEHLGYEYNEK

Nucleotide

• Length: 999 bp

>NTDB_id=296309 EQH32_RS01255 WP_025169218.1 227849..228847(+) (ruvB) [Streptococcus pneumoniae strain TVO_1901939]
ATGAGTAGAATTTTAGATAATGAGATGATGGGTGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATTGGTCAGGATAAGGTTAAGGATCAGCTTCAGATCTTTATCGAAGCCGCTAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGCCCTCCAGGGCTTGGGAAAACAACCATGGCTTTTGTCATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCTGGTCCTGTTATCGAAAAAGCGGGTGATTTGGTAGCGATTTTGAATGAGTTAGAGCCTGGAGATGTCCT
CTTTATTGACGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATAGATA
TTATGATTGGGGCTGGTGAGGGTAGTCGTAGTGTTCATTTGGAGTTACCACCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGCCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGGACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTTATCGAT
GATGTTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
CACCATGATTGAGATGTACGGTGGTGGCCCTGTCGGATTAGGAACTCTTTCTGTCAATATTGCCGAGGAGCGTGAGACTG
TAGAAGACATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGATGGCGACTGCTAAG
GCATATGAGCATTTGGGGTATGAGTACAATGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	98.795	100	0.988
ruvB	Streptococcus pneumoniae R6	98.494	100	0.985
ruvB	Streptococcus pneumoniae D39	98.494	100	0.985
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47